View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13061_high_9 (Length: 606)

Name: NF13061_high_9
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13061_high_9
NF13061_high_9
[»] chr4 (6 HSPs)
chr4 (12-591)||(48078515-48079072)
chr4 (273-567)||(26651313-26651606)
chr4 (273-404)||(9128372-9128503)
chr4 (274-404)||(1655699-1655829)
chr4 (274-404)||(45223673-45223803)
chr4 (274-404)||(37153356-37153486)
[»] chr1 (3 HSPs)
chr1 (270-404)||(52635182-52635316)
chr1 (273-404)||(23781627-23781758)
chr1 (272-558)||(50746232-50746515)
[»] chr8 (2 HSPs)
chr8 (273-404)||(3790124-3790255)
chr8 (265-305)||(3611756-3611796)
[»] chr7 (2 HSPs)
chr7 (274-404)||(12810562-12810692)
chr7 (287-567)||(43872881-43873161)
[»] chr2 (1 HSPs)
chr2 (365-567)||(3055356-3055558)
[»] chr3 (1 HSPs)
chr3 (38-237)||(35691836-35692030)


Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 12 - 591
Target Start/End: Original strand, 48078515 - 48079072
Alignment:
Q  12 agtgagatgaaacaccagaaacttggaccaaaaggataacaatacaaaggtgtcgtatatatatatgcggaacacctagaaggtgagacaccaaaaaact 111  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||| |||||||||||||||||| |||||||||||||    
T  48078515 agtgaaatgaaacaccagaaacttggaccaaaaggataacaatacaaaggtgtc----atatatatgtggaacacctagaaggtgacacaccaaaaaact 48078610  T
Q  112 ttgtatacataagaaacctctaaccaaaccctgaaggccccaaaaacctaaaccacaacagatcccactcctacaaggaggctgcgtcgaagctccaaag 211  Q
      ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  48078611 --gtatacataaggaacctctaaccaaaccctgaaggccccaaaaacctaaaccacaacagatcccactcccacaaggaggctgtgtcgaagctccaaag 48078708  T
Q  212 caggaaggaacctgcaatctgctgaacaatagacctaaattcacttgataaggattaattcatacttcctctgtatcaaaatattagcaaaattcaacta 311  Q
    || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  48078709 caagaaggaacctgcaatttgctgaacaatagacctaaattcacttgataaggattaattcatacttcctctgtatcaaaatattagcaaaattcaacaa 48078808  T
Q  312 tcttaactgtgtcaaaatacaagcaaaattgacttttttcctcatatttaaggatagtataccaaatatgcccttggtttaatactctaatttgcatact 411  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  48078809 tcttaactgtgtcaaaatataagcaaaattgatttttttcctcatatttaaggatagtataccaaatatacccttggtttaatactctaatttgcatacg 48078908  T
Q  412 tacagtttttcacaactacaattttccacacccatattaaatggggtagcttcttgaaaatatgaagtggctccttgaatactccctctccctctctaac 511  Q
    |||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48078909 tacag----------------ttttccacacccatattaaatggggtagcttcttgaaaatatgaagtggctccttgaatactctctctccctctctaac 48078992  T
Q  512 tccataaagcaattaattccacaagccccaaatgttttcttataaaaaagttgtttagaggaaaactcttagtgttttgt 591  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48078993 tccacaaagcaattaattccacaagccccaaatgttttcttataaaaaagttgtttagaggaaaactcttagtgttttgt 48079072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 273 - 567
Target Start/End: Complemental strand, 26651606 - 26651313
Alignment:
Q  273 atacttcctctgtatcaaaatattagcaaaattcaactatcttaactgtgtcaaaatacaagcaaaattgacttttttcctcatatttaaggatagtata 372  Q
    ||||| |||| || ||||||||| ||||||||||||||||||| |||||  ||||||| ||||||| |||||||| ||||||||||||||  ||||||||    
T  26651606 atactccctccgtgtcaaaatataagcaaaattcaactatcttgactgtaacaaaatataagcaaatttgactttattcctcatatttaaatatagtata 26651507  T
Q  373 ccaaatatgcccttggtttaatactctaatttgcatacttacagtttttcaca-actacaattttccacacccatattaaatggggtagcttcttgaaaa 471  Q
     |||||||||||||| |||||| ||||||||||||||| |  ||||||  ||| |||||||||||||||||   |||||| ||  |  ||||||| ||||    
T  26651506 tcaaatatgcccttgctttaattctctaatttgcatacgt-gagttttcaacacactacaattttccacacatgtattaattgaagctgcttctt-aaaa 26651409  T
Q  472 tatgaagtggctccttgaatactccctctccctct-ctaactccataaagcaattaattccacaagccccaaatgttttcttataaaaaagttgttt 567  Q
    ||||||| |  || |||  ||||||||||||||||  ||||| ||  |||| |||||||||||||||||||||||  |||||||||||| |||||||    
T  26651408 tatgaagggcttctttggttactccctctccctctgttaacttcacgaagc-attaattccacaagccccaaatgcattcttataaaaaggttgttt 26651313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 273 - 404
Target Start/End: Original strand, 9128372 - 9128503
Alignment:
Q  273 atacttcctctgtatcaaaatattagcaaaattcaactatcttaactgtgtcaaaatacaagcaaaattgacttttttcctcatatttaaggatagtata 372  Q
    ||||| |||| ||||| |||||| ||||||||||||||||||||  |||| ||||||| |||||||||||||||||||| |||||||||||| || ||||    
T  9128372 atactccctccgtatcgaaatataagcaaaattcaactatcttacttgtgacaaaatataagcaaaattgacttttttcatcatatttaaggctaatata 9128471  T
Q  373 ccaaatatgcccttggtttaatactctaattt 404  Q
    ||||| |||||||| ||||||||||| |||||    
T  9128472 ccaaaaatgcccttagtttaatactccaattt 9128503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 274 - 404
Target Start/End: Complemental strand, 1655829 - 1655699
Alignment:
Q  274 tacttcctctgtatcaaaatattagcaaaattcaactatcttaactgtgtcaaaatacaagcaaaattgacttttttcctcatatttaaggatagtatac 373  Q
    |||| |||| ||||| |||||| ||||||||||||||||||||  |||| ||||||| |||||||||||||||||||| |||||||||||| || |||||    
T  1655829 tactccctccgtatcgaaatataagcaaaattcaactatcttacttgtgacaaaatataagcaaaattgacttttttcatcatatttaaggctaatatac 1655730  T
Q  374 caaatatgcccttggtttaatactctaattt 404  Q
    |||| |||||||| ||||||||||| |||||    
T  1655729 caaaaatgcccttagtttaatactccaattt 1655699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 274 - 404
Target Start/End: Complemental strand, 45223803 - 45223673
Alignment:
Q  274 tacttcctctgtatcaaaatattagcaaaattcaactatcttaactgtgtcaaaatacaagcaaaattgacttttttcctcatatttaaggatagtatac 373  Q
    |||| |||| ||||| |||||| ||||||||||||||||||||  |||| ||||||| |||||||||||||||||||| |||||||||||| || |||||    
T  45223803 tactccctccgtatcgaaatataagcaaaattcaactatcttacttgtgacaaaatataagcaaaattgacttttttcatcatatttaaggctaatatac 45223704  T
Q  374 caaatatgcccttggtttaatactctaattt 404  Q
    |||| |||||||| ||||||||||| |||||    
T  45223703 caaaaatgcccttagtttaatactccaattt 45223673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 274 - 404
Target Start/End: Complemental strand, 37153486 - 37153356
Alignment:
Q  274 tacttcctctgtatcaaaatattagcaaaattcaactatcttaactgtgtcaaaatacaagcaaaattgacttttttcctcatatttaaggatagtatac 373  Q
    |||| |||| ||||| |||||| ||||||||||||||||||||  |||| ||||||| ||| |||||||||||||||| |||||||||||| || |||||    
T  37153486 tactccctccgtatcgaaatataagcaaaattcaactatcttacttgtgacaaaatataagtaaaattgacttttttcatcatatttaaggctaatatac 37153387  T
Q  374 caaatatgcccttggtttaatactctaattt 404  Q
    |||| |||||||| ||||||||||| |||||    
T  37153386 caaaaatgcccttagtttaatactccaattt 37153356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 270 - 404
Target Start/End: Original strand, 52635182 - 52635316
Alignment:
Q  270 ttcatacttcctctgtatcaaaatattagcaaaattcaactatcttaactgtgtcaaaatacaagcaaaattgacttttttcctcatatttaaggatagt 369  Q
    |||||||| |||| ||||| |||||| ||||||||||||||||||||  |||| ||||||| |||||||||||||||||||| |||||||||||| || |    
T  52635182 ttcatactccctccgtatcgaaatataagcaaaattcaactatcttacttgtgacaaaatataagcaaaattgacttttttcatcatatttaaggctaat 52635281  T
Q  370 ataccaaatatgcccttggtttaatactctaattt 404  Q
    |||||||| |||||||| ||||||||||| |||||    
T  52635282 ataccaaaaatgcccttagtttaatactccaattt 52635316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 273 - 404
Target Start/End: Complemental strand, 23781758 - 23781627
Alignment:
Q  273 atacttcctctgtatcaaaatattagcaaaattcaactatcttaactgtgtcaaaatacaagcaaaattgacttttttcctcatatttaaggatagtata 372  Q
    ||||| |||| ||||| |||||| ||||||||||||||||||||  |||| ||||||| |||||||||||||||||||| |||||||||||| || ||||    
T  23781758 atactccctccgtatcgaaatataagcaaaattcaactatcttacttgtgacaaaatataagcaaaattgacttttttcatcatatttaaggctaatata 23781659  T
Q  373 ccaaatatgcccttggtttaatactctaattt 404  Q
    ||||| |||||||| ||||||||||| |||||    
T  23781658 ccaaaaatgcccttagtttaatactccaattt 23781627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 272 - 558
Target Start/End: Complemental strand, 50746515 - 50746232
Alignment:
Q  272 catacttcctctgtatcaaaatattagcaaaattcaactatcttaactgtgtcaaaatacaagcaaaattgactttttt---cctcatatttaaggatag 368  Q
    |||||| ||||||| ||||||||| || ||||||||||||| | |       ||||||| |||||||||||||||||||   ||||||||||||  ||||    
T  50746515 catactccctctgtgtcaaaatataagtaaaattcaactatgtaa-------caaaatataagcaaaattgactttttttttcctcatatttaaatatag 50746423  T
Q  369 tataccaaatatgcccttggtttaatactctaa-tttgcatacttacagtttttcaca-actacaattttccacacccatattaaatggggtagcttctt 466  Q
    ||||||||||||||||||| |||||| ||| || ||||||||| |  |||||| |||| |||||||||||||||||   |||||| ||  |  |||||||    
T  50746422 tataccaaatatgcccttgctttaattctccaattttgcatacgt-gagttttccacacactacaattttccacacatgtattaattgaagctgcttctt 50746324  T
Q  467 gaaaatatgaagtggctccttgaatactccctctccctctctaactccataaagcaattaattccacaag-ccccaaatgttttcttataaaa 558  Q
    | |||||||||| | ||| |||| |||||||||||||| | ||||| ||  || ||||| |||||||||| |||||||||  |||||||||||    
T  50746323 g-aaatatgaagcgcctctttgattactccctctccctatgtaacttcacgaaacaattgattccacaagcccccaaatgcattcttataaaa 50746232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 273 - 404
Target Start/End: Original strand, 3790124 - 3790255
Alignment:
Q  273 atacttcctctgtatcaaaatattagcaaaattcaactatcttaactgtgtcaaaatacaagcaaaattgacttttttcctcatatttaaggatagtata 372  Q
    ||||| |||| ||||| |||||| ||||||||||||||||||||  |||| ||||||| |||||||||||||||||||| |||||||||||| || ||||    
T  3790124 atactccctccgtatcgaaatataagcaaaattcaactatcttacttgtgacaaaatataagcaaaattgacttttttcatcatatttaaggctaatata 3790223  T
Q  373 ccaaatatgcccttggtttaatactctaattt 404  Q
    ||||| |||||||| ||||||||||| |||||    
T  3790224 ccaaaaatgcccttagtttaatactccaattt 3790255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 3611756 - 3611796
Alignment:
Q  265 attaattcatacttcctctgtatcaaaatattagcaaaatt 305  Q
    ||||| ||||||| ||||||||||||||||| |||||||||    
T  3611756 attaaatcatactccctctgtatcaaaatataagcaaaatt 3611796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 274 - 404
Target Start/End: Original strand, 12810562 - 12810692
Alignment:
Q  274 tacttcctctgtatcaaaatattagcaaaattcaactatcttaactgtgtcaaaatacaagcaaaattgacttttttcctcatatttaaggatagtatac 373  Q
    |||| |||| ||||| |||||| ||||||||||||||||||||  |||| ||||||| |||||||||||||||||||| |||||||||||| || |||||    
T  12810562 tactccctccgtatcgaaatataagcaaaattcaactatcttacttgtgacaaaatataagcaaaattgacttttttcatcatatttaaggctaatatac 12810661  T
Q  374 caaatatgcccttggtttaatactctaattt 404  Q
    |||| |||||||| ||||||||||| |||||    
T  12810662 caaaaatgcccttagtttaatactccaattt 12810692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 287 - 567
Target Start/End: Original strand, 43872881 - 43873161
Alignment:
Q  287 tcaaaatattagcaaaattcaactatcttaactgtgtcaaaatacaagcaaaattgacttttttcctcatatttaaggatagtataccaaatatgccctt 386  Q
    ||||||||| |||||||||||||||||||| ||||   | |||| ||||||| ||||| || ||||| ||||||||  ||| ||||||||| ||||||||    
T  43872881 tcaaaatataagcaaaattcaactatcttagctgtaatagaatataagcaaatttgaccttattccttatatttaaatataatataccaaacatgccctt 43872980  T
Q  387 ggtttaatactctaatttgcatacttacagtttttcaca-actacaattttccacacccatattaaatggggtagcttcttgaaaatatgaagtggctcc 485  Q
    | |||||| ||| ||||||||| | |  |||||| |||| ||||||||||||||| |   |||||| ||  |  |||||||| |||||||||| | |||     
T  43872981 gctttaattctccaatttgcattcat-gagttttccacacactacaattttccacgcatgtattaattgaagatgcttcttg-aaatatgaagcgcctct 43873078  T
Q  486 ttgaatactccctctccctctctaactccataaagcaattaattccacaag-ccccaaatgttttcttataaaaaagttgttt 567  Q
    |||| ||||| |||||||||  ||||| ||  ||||||||||||||||||| |||||||||  |||||||||||| |||||||    
T  43873079 ttgattactcactctccctccgtaacttcacgaagcaattaattccacaagcccccaaatgcattcttataaaaaggttgttt 43873161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 365 - 567
Target Start/End: Complemental strand, 3055558 - 3055356
Alignment:
Q  365 atagtataccaaatatgcccttggtttaatactctaatttgcatacttacagtttttcaca-actacaattttccacacccatattaaatggggtagctt 463  Q
    ||||||||| ||||||||||||  |||||| ||| ||||||||||| |  ||||||||||| |||||||||||||||||   |||||| ||  |  ||||    
T  3055558 atagtatactaaatatgcccttcctttaattctccaatttgcatacgt-gagtttttcacacactacaattttccacacatgtattaattgaagctgctt 3055460  T
Q  464 cttgaaaatatgaagtggctccttgaatactccctctccctctctaactccataaagcaattaattccacaag-ccccaaatgttttcttataaaaaagt 562  Q
    |||| ||||||||||   ||| |||| ||||| |||| ||||| ||| | ||  ||||||||||||||||||| |||||||||  |||||||||||||||    
T  3055459 cttg-aaatatgaagcacctctttgattactctctcttcctctataatttcacgaagcaattaattccacaagcccccaaatgcattcttataaaaaagt 3055361  T
Q  563 tgttt 567  Q
    |||||    
T  3055360 tgttt 3055356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 237
Target Start/End: Complemental strand, 35692030 - 35691836
Alignment:
Q  38 accaaaaggataacaatacaaaggtgtcgtatatatatatgcggaacacctagaaggtgagacaccaaaaaactttgtatacataagaaacctctaacca 137  Q
    ||||||| ||||||| |||||||||||||||||||||    ||||||||||  ||| |   |||||||||| ||| | ||||| ||||| ||||||||||    
T  35692030 accaaaaagataacattacaaaggtgtcgtatatata----cggaacacctctaagatagcacaccaaaaagcttcgcatacaaaagaa-cctctaacca 35691936  T
Q  138 aacc-ctgaaggccccaaaaacctaaaccacaacagatcccactcctacaaggaggctgcgtcgaagctccaaagcaggaaggaacctgcaatctgctga 236  Q
    |||| || ||| ||   |||||| |||||||| ||||||||||| | |||||||||||| || | ||||||||  |||||||  ||||||||  ||||||    
T  35691935 aacctctaaagtccaagaaaacc-aaaccacagcagatcccactgccacaaggaggctgtgtagcagctccaagacaggaagagacctgcaacttgctga 35691837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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