View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_11 (Length: 599)
Name: NF13061_low_11
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 510; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 17 - 593
Target Start/End: Complemental strand, 3668952 - 3668373
Alignment:
| Q |
17 |
attactccggcgacggtgaataggaggaaatcttgttttttgaaaccgcaagaaaattgtgaagaaaatcgaagaaaaacgatttgcaaaccgaatttga |
116 |
Q |
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| T |
3668952 |
attactccggcgacggtgaataggaggaaatcttgttttttgaaacctcaagaaagttgtgaagaaaatcgaagaaaaacgatttgcaaaccgaatttga |
3668853 |
T |
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| Q |
117 |
atttgaattcaaattcagttaattctgcggttggatcgattaagcgtgtgaagaagaaagatgaagaaattgctcaggttcaaccgaagaaactgtttga |
216 |
Q |
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| T |
3668852 |
atttgaattcaaattcagttaattctgcggttggatcgattaagcgtgtgaagaagaaagatgaagaaattgctcaggttcaaccgaagaagctgtttga |
3668753 |
T |
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| Q |
217 |
aggtgaaaaatcagtgaagaaatcgttgaaacaaggtagaattgttgcaagcaggtataattccggtggtggtggtg---atgcgaggaagagatcgttt |
313 |
Q |
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| T |
3668752 |
aggtgaaaaatcagtgaagaaatcgttgaaacaaggtagaattgttgcaagccggtataattccggtggtggtggtggtgatgcgaggaaaagatcgttt |
3668653 |
T |
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| Q |
314 |
tcggagaataacaagtgtttagggagtgaaattagggctaagaaaaggtgggagataccaattgaagaagtggatgtgaatggttttgtaatgttaccga |
413 |
Q |
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| T |
3668652 |
tcggagaataataagggtttagggagtgaaatcagggctaagaagagatgggagataccaattgaagaagtggatgtgagtggttttgttatgttaccga |
3668553 |
T |
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| Q |
414 |
agatttcgacgatgaggtttgttgatgagagtcctagagattctggtgctgttaaaagagttgctgaattgaatggaaaaagatcttacttttgtgatga |
513 |
Q |
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| T |
3668552 |
agatttcgacaatgaggtttgttgatgagagtcctagagattctggtgctgttaaaagagttgctgaattgaatggaaaaagatcttacttttgtgatga |
3668453 |
T |
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| Q |
514 |
agatgaggaggagagagtgacggtggaggaagaaggtggttctgtttgtcaggttttgaattttgctgaagatgatgatg |
593 |
Q |
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| T |
3668452 |
agatgaggaggagagagtgatggtggaggaagaaggtggttctgtttgtcaggttttgaattttgctgaagatgatgatg |
3668373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 3669030 - 3668967
Alignment:
| Q |
17 |
attactccggcgacggtgaataggaggaaatcttgttttttgaaaccgcaagaaaattgtgaag |
80 |
Q |
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| T |
3669030 |
attactccggcgacggtgaatcggaggaagtcttgtttctggaaaccgcaggaaagttgtgaag |
3668967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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