View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13061_low_12 (Length: 589)

Name: NF13061_low_12
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13061_low_12
NF13061_low_12
[»] scaffold0667 (1 HSPs)
scaffold0667 (279-578)||(5139-5435)
[»] chr2 (25 HSPs)
chr2 (270-447)||(9357924-9358101)
chr2 (281-492)||(9316788-9316999)
chr2 (279-487)||(9060271-9060479)
chr2 (279-578)||(8572675-8572973)
chr2 (277-487)||(9292699-9292906)
chr2 (501-578)||(9357842-9357919)
chr2 (337-487)||(10372653-10372800)
chr2 (156-237)||(9358134-9358215)
chr2 (337-487)||(9321762-9321909)
chr2 (337-448)||(9329406-9329517)
chr2 (305-429)||(10336637-10336761)
chr2 (305-436)||(10348622-10348753)
chr2 (337-489)||(10353914-10354063)
chr2 (317-435)||(12018125-12018243)
chr2 (305-436)||(7114844-7114975)
chr2 (305-434)||(9283373-9283502)
chr2 (19-71)||(9358334-9358386)
chr2 (351-435)||(12011838-12011922)
chr2 (369-490)||(14551088-14551205)
chr2 (310-436)||(9275342-9275468)
chr2 (369-435)||(7612716-7612782)
chr2 (314-436)||(12005373-12005495)
chr2 (121-170)||(9358239-9358288)
chr2 (356-435)||(9365415-9365494)
chr2 (351-431)||(11986770-11986850)
[»] chr3 (1 HSPs)
chr3 (285-487)||(37463293-37463492)
[»] chr8 (1 HSPs)
chr8 (308-578)||(41965924-41966191)
[»] chr4 (2 HSPs)
chr4 (305-487)||(26575650-26575829)
chr4 (376-435)||(561990-562049)
[»] chr1 (4 HSPs)
chr1 (371-496)||(29442624-29442746)
chr1 (371-471)||(29452616-29452713)
chr1 (371-490)||(29467090-29467206)
chr1 (371-490)||(29423982-29424098)
[»] chr5 (1 HSPs)
chr5 (369-434)||(36225571-36225636)


Alignment Details
Target: scaffold0667 (Bit Score: 170; Significance: 6e-91; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 279 - 578
Target Start/End: Complemental strand, 5435 - 5139
Alignment:
Q  279 ccttccttccaatggctgttgaccgccttccgccggaaatactcgctgaaattttgttccgcttaccagtaaaatcacttctccggtttggatcaacttc 378  Q
    ||||||||||||||||   |||||||||||||||||| | |||||| ||||| || | ||||||||| ||||||||||||||||| ||  ||||||||||    
T  5435 ccttccttccaatggcgtctgaccgccttccgccggacacactcgcagaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacttc 5336  T
Q  379 aaaatcacttaaatccttaatcgattctgacaacttcataaaccttcacctcaaaaataattccatcaatcgatacttaatccttcgacacaaattcgat 478  Q
    |||||||||||||||| ||||||||||| |||||||||| |||||||||| |||||||   ||| ||||| ||| ||| |||||||||| || || | ||    
T  5335 aaaatcacttaaatccataatcgattctcacaacttcatcaaccttcaccgcaaaaat---tccctcaatagatccttcatccttcgactcagatccaat 5239  T
Q  479 atctaccaaatcgaagatgatctctcaaacttcaccaccgccgttccactcaaccaccctttcacgcgtaacaccaccaacatttctcttatcggttcat 578  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  5238 atctaccaaatcgaagatgatttctcaaacctcaccaccgccgttccactcaaccaccctttcacgcgtaacagcaccaacattgctcttatcggttcat 5139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 270 - 447
Target Start/End: Complemental strand, 9358101 - 9357924
Alignment:
Q  270 tcctaacaaccttccttccaatggctgttgaccgccttccgccggaaatactcgctgaaattttgttccgcttaccagtaaaatcacttctccggtttgg 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  9358101 tcctaacaaccttccttccaatggctgttgaccgccttccgccggaaatactcgccaaaattttgttccgcttaccagtaaaatcacttctccggtttgg 9358002  T
Q  370 atcaacttcaaaatcacttaaatccttaatcgattctgacaacttcataaaccttcacctcaaaaataattccatcaa 447  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9358001 atcaacttcaaaatcacttaaatccttaatcgattctcacaacttcataaaccttcacctcaaaaataattccatcaa 9357924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 281 - 492
Target Start/End: Complemental strand, 9316999 - 9316788
Alignment:
Q  281 ttccttccaatggctgttgaccgccttccgccggaaatactcgctgaaattttgttccgcttaccagtaaaatcacttctccggtttggatcaacttcaa 380  Q
    |||||||||||||| | |||| | |||||||||||||||||||| ||||| || | || |||||||||||||||||||||||| ||  ||||||||||||    
T  9316999 ttccttccaatggcggctgacggtcttccgccggaaatactcgccgaaatcttctcccacttaccagtaaaatcacttctccgattccgatcaacttcaa 9316900  T
Q  381 aatcacttaaatccttaatcgattctgacaacttcataaaccttcacctcaaaaataattccatcaatcgatacttaatccttcgacacaaattcgatat 480  Q
    ||||||||||||| ||||| |||||| |||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||   |||||| |||  |    
T  9316899 aatcacttaaatctttaatagattctcacaacttcatcaaccttcacctcaaaaataattccctcaatcgatccttaatccttcattacaaatccgaact 9316800  T
Q  481 ctaccaaatcga 492  Q
    ||||||||||||    
T  9316799 ctaccaaatcga 9316788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 279 - 487
Target Start/End: Original strand, 9060271 - 9060479
Alignment:
Q  279 ccttccttccaatggctgttgaccgccttccgccggaaatactcgctgaaattttgttccgcttaccagtaaaatcacttctccggtttggatcaacttc 378  Q
    |||||||||||||||| | |||    ||||||||||||||||| || ||||| || | ||||||||| ||  ||||||||||||| ||  ||||||||||    
T  9060271 ccttccttccaatggcggctgatgttcttccgccggaaatacttgccgaaatcttctcccgcttaccggttcaatcacttctccgattccgatcaacttc 9060370  T
Q  379 aaaatcacttaaatccttaatcgattctgacaacttcataaaccttcacctcaaaaataattccatcaatcgatacttaatccttcgacacaaattcgat 478  Q
    |||||||||||||||||||||||||||| |||||||||  |||||| |||||||||||||| || |||||||||   |||||||||||||||||| ||||    
T  9060371 aaaatcacttaaatccttaatcgattctcacaacttcactaacctttacctcaaaaataatcccctcaatcgatttataatccttcgacacaaatccgat 9060470  T
Q  479 atctaccaa 487  Q
     ||||||||    
T  9060471 ctctaccaa 9060479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 279 - 578
Target Start/End: Original strand, 8572675 - 8572973
Alignment:
Q  279 ccttccttccaatggctgttgaccgccttccgccggaaatactcgctgaaattttgttccgcttaccagtaaaatcacttctccggtttggatcaacttc 378  Q
    |||||||||||||||| | |||    |||||| |||||||| || ||||||| || | |||| |||||||||| ||||||||||| ||  ||||||||||    
T  8572675 ccttccttccaatggcgggtgatgttcttccgtcggaaatagtcactgaaatcttctcccgcataccagtaaa-tcacttctccgattccgatcaacttc 8572773  T
Q  379 aaaatcacttaaatccttaatcgattctgacaacttcataaaccttcacctcaaaaataattccatcaatcgatacttaatccttcgacacaaattcgat 478  Q
    |||||||||||||||  ||||||||||  |||||||||  |||||||||||||||   |||||| ||||||| | ||||||| |||||| ||| | ||||    
T  8572774 aaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaa---aattccctcaatcgttccttaatcattcgacgcaactacgat 8572870  T
Q  479 atctaccaaatcgaagatgatctctcaaacttcaccaccgccg---ttccactcaaccaccctttcacgcgtaacaccaccaacatttctcttatcggtt 575  Q
    |||||||||||||| |||||| ||||  |  | ||||||||||   ||||||||||||| |||||| |  |||||| |||||| ||| ||||||||||||    
T  8572871 atctaccaaatcgatgatgatttctctgatctaaccaccgccgagtttccactcaaccatcctttctccggtaacagcaccaaaattactcttatcggtt 8572970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 277 - 487
Target Start/End: Complemental strand, 9292906 - 9292699
Alignment:
Q  277 aaccttccttccaatggctgttgaccgccttccgccggaaatactcgctgaaattttgttccgcttaccagtaaaatcacttctccggtttggatcaact 376  Q
    ||||||| |||| ||||| |  |||||||||||||| |||||| |||| ||||| || | |||| |||||||||||||||||||| | ||  |||||| |    
T  9292906 aaccttctttccgatggcggcggaccgccttccgccagaaatagtcgccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatt 9292807  T
Q  377 tcaaaatcacttaaatccttaatcgattctgacaacttcataaaccttcacctcaaaaataattccatcaatcgatacttaatccttcgacacaaattcg 476  Q
    |||||||||||||||||| ||||||||||| ||| |||||  |||||||||||||||   |||||| |||| |||| |||||||||||||||||||||||    
T  9292806 tcaaaatcacttaaatccctaatcgattctcacagcttcactaaccttcacctcaaa---aattccctcaaccgatccttaatccttcgacacaaattcg 9292710  T
Q  477 atatctaccaa 487  Q
    || ||||||||    
T  9292709 atctctaccaa 9292699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 501 - 578
Target Start/End: Complemental strand, 9357919 - 9357842
Alignment:
Q  501 tctcaaacttcaccaccgccgttccactcaaccaccctttcacgcgtaacaccaccaacatttctcttatcggttcat 578  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9357919 tctcaaacttcaccaccgccgttccactcaaccaccctttcacgcgtaacagcaccaacatttctcttatcggttcat 9357842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 337 - 487
Target Start/End: Complemental strand, 10372800 - 10372653
Alignment:
Q  337 ccgcttaccagtaaaatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgattctgacaacttcataaaccttcacctcaaaaat 436  Q
    ||||||||| ||||||||||||||||| ||  ||||||||||||||||| ||||||| |||||||||||  |||| ||||| |||||||||||| ||       
T  10372800 ccgcttaccggtaaaatcacttctccgattccgatcaacttcaaaatcatttaaatcattaatcgattcccacaaattcatcaaccttcacctccaa--- 10372704  T
Q  437 aattccatcaatcgatacttaatccttcgacacaaattcgatatctaccaa 487  Q
    |||||| ||||||||| ||||||||||| || |||||||||| ||||||||    
T  10372703 aattccctcaatcgatccttaatccttcaacgcaaattcgatctctaccaa 10372653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 9358215 - 9358134
Alignment:
Q  156 acgtaaatagttcttcttttctcgtctgttgtttcatctgcgtaataatatttggttaggcgggtacccaataacttgctct 237  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||    
T  9358215 acgtaaatagttcttcttttctcgtctgttgttttagctgcgtaataatatttggttaggtgggtacccaataacttgctct 9358134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 337 - 487
Target Start/End: Complemental strand, 9321909 - 9321762
Alignment:
Q  337 ccgcttaccagtaaaatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgattctgacaacttcataaaccttcacctcaaaaat 436  Q
    ||||||||| ||||||||||||||||  ||  |||||||||| ||||||||||||||| ||||||||||| || ||||||| |||||||| ||||||       
T  9321909 ccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattctcaccacttcatcaaccttcatctcaaa--- 9321813  T
Q  437 aattccatcaatcgatacttaatccttcgacacaaattcgatatctaccaa 487  Q
    |||||| ||| ||||| ||||||| ||| ||||||||||||| ||||||||    
T  9321812 aattccctcagtcgatccttaatcattcaacacaaattcgatctctaccaa 9321762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 337 - 448
Target Start/End: Complemental strand, 9329517 - 9329406
Alignment:
Q  337 ccgcttaccagtaaaatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgattctgacaacttcataaaccttcacctcaaaaat 436  Q
    ||||||||| ||||||||||||||||| ||  | |||||||||||||||||||||||| ||||||||||  |||||||||  ||||||||||||||||||    
T  9329517 ccgcttaccggtaaaatcacttctccgattccgttcaacttcaaaatcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaat 9329418  T
Q  437 aattccatcaat 448  Q
    |||||| |||||    
T  9329417 aattccctcaat 9329406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 305 - 429
Target Start/End: Complemental strand, 10336761 - 10336637
Alignment:
Q  305 cttccgccggaaatactcgctgaaattttgttccgcttaccagtaaaatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgatt 404  Q
    |||||||||||||| ||| | ||||| || | ||| ||||| ||||||||||||||||| ||  ||||||| ||||||||||||||||||||||||||||    
T  10336761 cttccgccggaaattctctccgaaatcttctcccgtttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgatt 10336662  T
Q  405 ctgacaacttcataaaccttcacct 429  Q
    || |||| ||||| |||||||||||    
T  10336661 ctcacaaattcatcaaccttcacct 10336637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 305 - 436
Target Start/End: Complemental strand, 10348753 - 10348622
Alignment:
Q  305 cttccgccggaaatactcgctgaaattttgttccgcttaccagtaaaatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgatt 404  Q
    ||||||||||| || ||||| ||||| || | ||||||||| ||||||||||||||||| ||  ||||||| ||||||||||||||||||||||||||||    
T  10348753 cttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgatt 10348654  T
Q  405 ctgacaacttcataaaccttcacctcaaaaat 436  Q
    |   ||| ||||| ||||||||||| ||||||    
T  10348653 ccctcaaattcatcaaccttcacctaaaaaat 10348622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 337 - 489
Target Start/End: Complemental strand, 10354063 - 10353914
Alignment:
Q  337 ccgcttaccagtaaaatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgattctgacaacttcataaaccttcacctcaaaaat 436  Q
    ||||||||| |||| |||||||||| | ||  ||||||||||||||||| |||||||| ||||||||||  |||| ||||| ||||||||||||| |       
T  10354063 ccgcttaccggtaatatcacttctcagattccgatcaacttcaaaatcatttaaatccctaatcgattccaacaaattcatcaaccttcacctcaga--- 10353967  T
Q  437 aattccatcaatcgatacttaatccttcgacacaaattcgatatctaccaaat 489  Q
    ||||||  ||||| || |||||| ||||||  |||||||||||||||||||||    
T  10353966 aattcccccaatcaatccttaattcttcgattcaaattcgatatctaccaaat 10353914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 317 - 435
Target Start/End: Original strand, 12018125 - 12018243
Alignment:
Q  317 atactcgctgaaattttgttccgcttaccagtaaaatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgattctgacaacttca 416  Q
    |||||||| ||||| || | |||||||||||||||||||||||| || ||  | |||||||||||||||||||||||| ||||||||||| |||||||||    
T  12018125 atactcgccgaaatcttctcccgcttaccagtaaaatcacttcttcgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttca 12018224  T
Q  417 taaaccttcacctcaaaaa 435  Q
      || ||||| ||||||||    
T  12018225 ccaatcttcaactcaaaaa 12018243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 305 - 436
Target Start/End: Original strand, 7114844 - 7114975
Alignment:
Q  305 cttccgccggaaatactcgctgaaattttgttccgcttaccagtaaaatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgatt 404  Q
    |||||||||||||||||  | ||||| || |  ||| ||||||||  ||||||||| || ||  ||||||||||||||||||||||||||||||||||||    
T  7114844 cttccgccggaaatactatccgaaatcttctctcgcctaccagtacgatcacttcttcgattccgatcaacttcaaaatcacttaaatccttaatcgatt 7114943  T
Q  405 ctgacaacttcataaaccttcacctcaaaaat 436  Q
    |  |||| ||||| |||||||| || ||||||    
T  7114944 cccacaaattcatcaaccttcatcttaaaaat 7114975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 305 - 434
Target Start/End: Original strand, 9283373 - 9283502
Alignment:
Q  305 cttccgccggaaatactcgctgaaattttgttccgcttaccagtaaaatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgatt 404  Q
    ||||||||||| ||||| || ||||| || | | |||||||||| |||||||| ||||| ||  |||||||||| |||||||||  |||| |||| ||||    
T  9283373 cttccgccggacatacttgccgaaatcttctcctgcttaccagttaaatcactactccgattccgatcaacttctaaatcacttcgatccctaatagatt 9283472  T
Q  405 ctgacaacttcataaaccttcacctcaaaa 434  Q
    || |||| ||||| ||||||||||||||||    
T  9283473 ctcacaaattcatcaaccttcacctcaaaa 9283502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 9358386 - 9358334
Alignment:
Q  19 ggttggagcatggctctttcaataaatagagtagcgagaggaaaaatatggag 71  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9358386 ggttggagcatgactctttcaataaatagagtagcgagaggaaaaatatggag 9358334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 351 - 435
Target Start/End: Original strand, 12011838 - 12011922
Alignment:
Q  351 aatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgattctgacaacttcataaaccttcacctcaaaaa 435  Q
    ||||||||||||| ||  | |||||||||||||||||||||||| ||||||||||| |||||||||  || ||||||||||||||    
T  12011838 aatcacttctccgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatcttcacctcaaaaa 12011922  T

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Target: chr2; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 490
Target Start/End: Complemental strand, 14551205 - 14551088
Alignment:
Q  369 gatcaacttcaaaatcacttaaatccttaatcgattctgacaacttcataaaccttcacctcaaaaataattccatcaatcgatacttaatccttcgaca 468  Q
    |||||||||||||||||||| ||||| ||||||||||  |||||||||| || ||||||||    || |||||| ||||| | | |||||||||||||||    
T  14551205 gatcaacttcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacct----aaaaattccctcaattgttccttaatccttcgaca 14551110  T
Q  469 caaattcgatatctaccaaatc 490  Q
    ||| | | || |||||||||||    
T  14551109 caagtccaatctctaccaaatc 14551088  T

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Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 310 - 436
Target Start/End: Complemental strand, 9275468 - 9275342
Alignment:
Q  310 gccggaaatactcgctgaaattttgttccgcttaccagtaaaatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgattctgac 409  Q
    |||||||||||  || ||||| || | ||| ||||||||| ||||||||||| | ||  ||||||  ||||||||||||||||| || || |||||  ||    
T  9275468 gccggaaatacctgccgaaatcttctcccggttaccagtacaatcacttctctgattccgatcaatctcaaaatcacttaaatcgttgattgattcccac 9275369  T
Q  410 aacttcataaaccttcacctcaaaaat 436  Q
    |||||||| |||||||| |||||||||    
T  9275368 aacttcatcaaccttcatctcaaaaat 9275342  T

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Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 369 - 435
Target Start/End: Complemental strand, 7612782 - 7612716
Alignment:
Q  369 gatcaacttcaaaatcacttaaatccttaatcgattctgacaacttcataaaccttcacctcaaaaa 435  Q
    |||||| ||| ||||| |||||||||||||| |||||  ||||||||| ||||||||||||||||||    
T  7612782 gatcaatttctaaatcgcttaaatccttaattgattcccacaacttcacaaaccttcacctcaaaaa 7612716  T

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Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 314 - 436
Target Start/End: Original strand, 12005373 - 12005495
Alignment:
Q  314 gaaatactcgctgaaattttgttccgcttaccagtaaaatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgattctgacaact 413  Q
    ||||||||| | ||||| || | |||||||||   | ||||||||||||| ||  | ||||||||| |||| ||||||||| ||||||||||| ||||||    
T  12005373 gaaatactcaccgaaatcttctcccgcttacctccacaatcacttctccgattccgctcaacttcagaatcgcttaaatccataatcgattctcacaact 12005472  T
Q  414 tcataaaccttcacctcaaaaat 436  Q
    |||  |||||||| || ||||||    
T  12005473 tcaccaaccttcatctaaaaaat 12005495  T

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Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 9358288 - 9358239
Alignment:
Q  121 ttaatttctattgtgaggtttctcctgggattttcacgtaaatagttctt 170  Q
    ||||||| |||||||||||||||| ||| |||||||||||||||||||||    
T  9358288 ttaatttttattgtgaggtttctcatggaattttcacgtaaatagttctt 9358239  T

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Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 435
Target Start/End: Complemental strand, 9365494 - 9365415
Alignment:
Q  356 cttctccggtttggatcaacttcaaaatcacttaaatccttaatcgattctgacaacttcataaaccttcacctcaaaaa 435  Q
    |||||||| ||  ||||||| |||||||||||||||||| ||||||||||| ||| |||||  ||||| || ||||||||    
T  9365494 cttctccgattccgatcaacctcaaaatcacttaaatccataatcgattctcacaccttcaccaacctccatctcaaaaa 9365415  T

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Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 431
Target Start/End: Original strand, 11986770 - 11986850
Alignment:
Q  351 aatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgattctgacaacttcataaaccttcacctca 431  Q
    ||||||||||||| ||  | ||||||||| |||| ||||||||| |||| |||||| |||||||||  || ||||||||||    
T  11986770 aatcacttctccgattccgctcaacttcagaatcgcttaaatccataattgattctcacaacttcaccaatcttcacctca 11986850  T

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Target: chr3 (Bit Score: 81; Significance: 8e-38; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 285 - 487
Target Start/End: Complemental strand, 37463492 - 37463293
Alignment:
Q  285 ttccaatggctgttgaccgccttccgccggaaatactcgctgaaattttgttccgcttaccagtaaaatcacttctccggtttggatcaacttcaaaatc 384  Q
    |||||||||| | |||| | |||||||||||||||||||| |||||  | | ||| ||||||||| ||||||||||||| ||  ||||||||||||||||    
T  37463492 ttccaatggcggatgacggtcttccgccggaaatactcgccgaaatcctctcccgtttaccagtagaatcacttctccgattccgatcaacttcaaaatc 37463393  T
Q  385 acttaaatccttaatcgattctgacaacttcataaaccttcacctcaaaaataattccatcaatcgatacttaatccttcgacacaaattcgatatctac 484  Q
    ||||||||| |||||||||||| |||||||||| |||||||| ||||||   ||| || |||||| || | ||||| ||||| |||| | ||||||||||    
T  37463392 acttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaa---aatcccctcaatcaatccgtaatcattcgaaacaactccgatatctac 37463296  T

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Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 308 - 578
Target Start/End: Original strand, 41965924 - 41966191
Alignment:
Q  308 ccgccggaaatactcgctgaaattttgttccgcttaccagtaaaatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgattctg 407  Q
    ||||| ||||||||||||||||| || | ||  ||||| ||||||||| ||||||| ||  ||||||| || |||||||||  |||||||||||||||      
T  41965924 ccgccagaaatactcgctgaaatcttctccctattaccggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcgattccc 41966023  T
Q  408 acaacttcataaaccttcacctcaaaaataattccatcaatcgatacttaatccttcgacacaaattcgatatctaccaaatcgaagatgatctctcaaa 507  Q
    |||||||||| ||||||||||||| |   || ||| ||||||||| |||||||||||||| |||    ||| |||||||  |||| || ||| |||| ||    
T  41966024 acaacttcatcaaccttcacctcaga---aaatccctcaatcgatccttaatccttcgactcaacactgatctctaccagttcgatgaggatttctctaa 41966120  T
Q  508 cttcaccaccgccgttccactcaaccaccctttcacgcgtaacaccaccaacatttctcttatcggttcat 578  Q
    | | ||||||||||||||||||||||| ||||||  |||| ||| |||||||||  ||||| | |||||||    
T  41966121 cctaaccaccgccgttccactcaaccatcctttcttgcgtcacagcaccaacatcactcttctgggttcat 41966191  T

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Target: chr4 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 305 - 487
Target Start/End: Complemental strand, 26575829 - 26575650
Alignment:
Q  305 cttccgccggaaatactcgctgaaattttgttccgcttaccagtaaaatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgatt 404  Q
    ||||| |||||||| ||| | ||||| || | ||| ||||| |||| |||||||||||| ||  |||||||||||||||||||||||| |||||||||||    
T  26575829 cttccaccggaaattctcaccgaaatcttctcccgtttaccggtaatatcacttctccgattccgatcaacttcaaaatcacttaaattcttaatcgatt 26575730  T
Q  405 ctgacaacttcataaaccttcacctcaaaaataattccatcaatcgatacttaatccttcgacacaaattcgatatctaccaa 487  Q
    |  |||| ||||| ||||||||||||| |   ||||||  |||||||| |||||||||||||  |||||||||||||||||||    
T  26575729 cctacaaattcatcaaccttcacctcaga---aattcccccaatcgatccttaatccttcgattcaaattcgatatctaccaa 26575650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 435
Target Start/End: Complemental strand, 562049 - 561990
Alignment:
Q  376 ttcaaaatcacttaaatccttaatcgattctgacaacttcataaaccttcacctcaaaaa 435  Q
    ||||||||  ||||||||| ||||||||||  |||||||||  |||||||||||||||||    
T  562049 ttcaaaatggcttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaa 561990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 496
Target Start/End: Original strand, 29442624 - 29442746
Alignment:
Q  371 tcaacttcaaaatcacttaaatccttaatcgattctgacaacttcataaaccttcacctcaaaaataattccatcaatcgatacttaatccttcgacaca 470  Q
    ||||| || ||||||||| ||||| ||||||||||  | |||||||| || ||||||||| |||||  |||| ||||||| | |||||||||||||||||    
T  29442624 tcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaat--ttcc-tcaatcgttccttaatccttcgacaca 29442720  T
Q  471 aattcgatatctaccaaatcgaagat 496  Q
    | || ||| |||||||||||||||||    
T  29442721 actttgatttctaccaaatcgaagat 29442746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 471
Target Start/End: Original strand, 29452616 - 29452713
Alignment:
Q  371 tcaacttcaaaatcacttaaatccttaatcgattctgacaacttcataaaccttcacctcaaaaataattccatcaatcgatacttaatccttcgacaca 470  Q
    ||||| |||||||||||| ||||| ||||||||||| |||||||||| || ||||||||| ||   |||||| ||||||| | |||||||||||||||||    
T  29452616 tcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaa---aattccctcaatcgttccttaatccttcgacaca 29452712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 371 - 490
Target Start/End: Original strand, 29467090 - 29467206
Alignment:
Q  371 tcaacttcaaaatcacttaaatccttaatcgattctgacaacttcataaaccttcacctcaaaaataattccatcaatcgatacttaatccttcgacaca 470  Q
    ||||| |||||||||||| ||||| ||||||||||  |||||||||| || |||||||||  |   |||||| ||||||| | |||||||||||||||||    
T  29467090 tcaacctcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacctccga---aattccctcaatcgtttcttaatccttcgacaca 29467186  T
Q  471 aattcgatatctaccaaatc 490  Q
    | | |||| |||||||||||    
T  29467187 actccgatttctaccaaatc 29467206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 371 - 490
Target Start/End: Complemental strand, 29424098 - 29423982
Alignment:
Q  371 tcaacttcaaaatcacttaaatccttaatcgattctgacaacttcataaaccttcacctcaaaaataattccatcaatcgatacttaatccttcgacaca 470  Q
    ||||| |||||||||||| ||||  ||||||||||  ||| |||||| || ||||||||| |   ||||||| ||||||| | |||||||||||||||||    
T  29424098 tcaacctcaaaatcacttcaatctctaatcgattcccacagcttcatcaagcttcacctcca---taattccttcaatcgttccttaatccttcgacaca 29424002  T
Q  471 aattcgatatctaccaaatc 490  Q
    | |  ||| |||||||||||    
T  29424001 actctgatttctaccaaatc 29423982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 434
Target Start/End: Complemental strand, 36225636 - 36225571
Alignment:
Q  369 gatcaacttcaaaatcacttaaatccttaatcgattctgacaacttcataaaccttcacctcaaaa 434  Q
    ||||||||||||||||||||||||| |||||||||||  |||||||||  || |||||||||||||    
T  36225636 gatcaacttcaaaatcacttaaatcgttaatcgattcgcacaacttcactaatcttcacctcaaaa 36225571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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