View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_13 (Length: 589)
Name: NF13061_low_13
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 272 - 572
Target Start/End: Complemental strand, 47829012 - 47828712
Alignment:
| Q |
272 |
tctctgcaaatatatcannnnnnnattttagaagaaaaattattaattggcttctgattattttttccatgataactagaaaacccaattagtaatttcc |
371 |
Q |
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| T |
47829012 |
tctctgcaaatatatcatttttttattttagaagaaaaattattaattggcttctgattattctttccatgataactagaaaagccaattagtaatttcc |
47828913 |
T |
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| Q |
372 |
cttctaccgtagtgataataattggtttagtactagtgacaagttgttgtttaatagaaaacatggttgaatttgaatctgtaaagatcttaatccttcg |
471 |
Q |
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| T |
47828912 |
cttctaccgtagtgataataattggtttagtactagtgacaagttgttgtttaatagaaaacatggttgaatttgaatctgtaaagatcttaatccttcg |
47828813 |
T |
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| Q |
472 |
cattgcaacttgcaaagcttcttgagacatattagcaaagcaaatcctaaaccagccaggttcagaacaatgacaagaagatccaggagatatattcaaa |
571 |
Q |
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| T |
47828812 |
cattgcaacttgcaaagcttcttgagacatattagcaaagcaaatcctaaaccacccaggttcagaacaatgacaagaagatccaggagatatattcaaa |
47828713 |
T |
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| Q |
572 |
c |
572 |
Q |
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| T |
47828712 |
c |
47828712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 275
Target Start/End: Complemental strand, 47829344 - 47829079
Alignment:
| Q |
13 |
aatataatcggtgtgtgagtttggggagaagagtagtgttgattaattccgttctcacttctattctcatattctattggtgtgcaaagcactcaaagcc |
112 |
Q |
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| T |
47829344 |
aatataatcggtgtgtgagtttggggagaagagtagtgttgattaattccgttctcacttctattctcatattctattggtgtgcaaagcactcaaagcc |
47829245 |
T |
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| Q |
113 |
atagaaccaaataatacacaagcaaattacgttttattttctttccataaacagtagtagatacaatacaatcaaattaaaatacataaactaagcccct |
212 |
Q |
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| T |
47829244 |
atagaaccaaataatacacaagcaaattacgttttattttctttccataaacagtagtagatacaatacaatcaaattaaaatacataaactaagcccct |
47829145 |
T |
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| Q |
213 |
ggaaacattcattaatgttaacaat---aatatacatatatatgtgcaagtagtttcttccttctc |
275 |
Q |
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| T |
47829144 |
ggaaacattcattaatgttaacaataataatatacatatatatgtgcaagtagtttcttccttctc |
47829079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 570
Target Start/End: Original strand, 42788822 - 42788893
Alignment:
| Q |
499 |
catattagcaaagcaaatcctaaaccagccaggttcagaacaatgacaagaagatccaggagatatattcaa |
570 |
Q |
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| T |
42788822 |
catattagcaaagcagactctaaaccaaccaggttgatcacaatgacaagaacaccccggagatatattcaa |
42788893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 570
Target Start/End: Original strand, 42798360 - 42798431
Alignment:
| Q |
499 |
catattagcaaagcaaatcctaaaccagccaggttcagaacaatgacaagaagatccaggagatatattcaa |
570 |
Q |
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| T |
42798360 |
catattagcaaagcagactctaaaccaaccaggttgatcacaatgacaagaacaccccggagatatattcaa |
42798431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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