View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_15 (Length: 582)
Name: NF13061_low_15
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 572
Target Start/End: Complemental strand, 3639307 - 3638740
Alignment:
| Q |
1 |
atttgattgcagaggttgaagaaagctttgccattatcgtgtgattttgaaagaagtttaaggttttgatttaacaattggggattagggtttatgattt |
100 |
Q |
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| T |
3639307 |
atttgattgcagaggttgaagaaagctttgacattatcgtgtgattttgaaagaagtttaaggttttgatttaacaattggggattagggtttatgattt |
3639208 |
T |
|
| Q |
101 |
gaaattgagcgagcttcgctatttgattcagattctgaggcttcatttgtattcttgttaatctgaagctccatttagtatttagtttagatgagttggg |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3639207 |
gaaattgagagagcttcgctatttgattcagattctgaggcttcatttgtattcttgttaatctgaagctccatttagtatttagtttagatgagtcggg |
3639108 |
T |
|
| Q |
201 |
tggtctcgactcgagagtagtagtaacttgtaacagtcatgcttgagttagaag---ttgggggaaaattgcatttttccctccaacccggaatgtattt |
297 |
Q |
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| T |
3639107 |
tggtctcga-----gagtagtagtaactagtaacagtcatgcttgagttagaagaagttgggggaaaattgtatttttccctccaacccggaatgtattt |
3639013 |
T |
|
| Q |
298 |
gggttataaaatcgtccgggtcgtgtgtgtttaaacgggtcggtccggtttattatgcaaataaaattacccggttttgtttccaaaaacacttttgcct |
397 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3639012 |
gggttataaaatcgtccgggtcgtgtgt--ttaaacgggtcggtccggtttattatgcaaataaaattacccggttttgtttccaaaaacacttttgcct |
3638915 |
T |
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| Q |
398 |
cctaagttcatagcttcttcaatcacctctcgtacactgtacgagattcttagtgcaattcgattttgctcatttgaactcttgtattcgtttttgtgtg |
497 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
3638914 |
cctaagttcatagcttcttcaattacctctcgtacactgtacgagattcttagtacaattcgattttgctcatttaaactcttgtattcgtttttgtctg |
3638815 |
T |
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| Q |
498 |
ccagtagcgtgtgattctgtgaaatttgttggatagtttgattcaggagaaaaggtttgtagttttatgcctatg |
572 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3638814 |
ccagtagcgtgtgattctgtgaaatttgttggatagtttgattcaggagaaaaggtttgtagttttatgcctatg |
3638740 |
T |
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