View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_16 (Length: 574)
Name: NF13061_low_16
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 188 - 526
Target Start/End: Complemental strand, 18649824 - 18649488
Alignment:
| Q |
188 |
cgtaccataaataatattttcttaaaaaagagtctatgtagtgtatgagnnnnnnnnaggggtattgaaggtgtattagtgttagtgtccgtcaataacg |
287 |
Q |
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| T |
18649824 |
cgtaccatagataatattttcttaaaaaagagtctatgtagtgtatgagtcttttttaggggtattaaagatgtattagtgttagtgtctgttaataacg |
18649725 |
T |
|
| Q |
288 |
cataattttgcatcattattgtcgtatctggtgtcggtgtctatttttatgtatgtgattcgtaggaaaagtttttgtgttcactattttatgcttgttt |
387 |
Q |
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| T |
18649724 |
catatttttgcatcattattgtcgtatctggtgtcggtgtctatttttatgtacgtgattcttaggaaaagttt--gtgttcactattttatgctttttt |
18649627 |
T |
|
| Q |
388 |
tgattgtgttggtggtatcaccttttcaccaattacgtgcctctatgaaccatgtactcatataggatatattataatcgatgaagtaattaaaaagtat |
487 |
Q |
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| T |
18649626 |
tgattgtgttggtggtatcaccttttcaccaattacgtgcctatatgaaccatgtactcatataggatatactataatcgatgaagtaattaaaaagtat |
18649527 |
T |
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| Q |
488 |
aagtgttgggttggtttcatataataattgtttaagtgg |
526 |
Q |
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| T |
18649526 |
cagtgttgggttggtttcatataataattgtttaagtgg |
18649488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 18650012 - 18649900
Alignment:
| Q |
1 |
cattggtctcaattttttctctttcatctcttttgttaaacaacactttatagtcaaaataaaaggttttagttgaagatatccttgcattactctcaaa |
100 |
Q |
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| T |
18650012 |
cattggtctcaattttttctctttcatctcttttgttaaacaacactttatagtcaaaataaaaggttttagttgaagatgtccttgcattactctcaaa |
18649913 |
T |
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| Q |
101 |
tattaatacactc |
113 |
Q |
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| T |
18649912 |
tattaatacactc |
18649900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 18646766 - 18646654
Alignment:
| Q |
1 |
cattggtctcaattttttctctttcatctcttttgttaaacaacactttatagtcaaaataaaaggttttagttgaagatatccttgcattactctcaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| || || |||| |||||||| |
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| T |
18646766 |
cattggtctcaattttttctctttcatctcttttgttaaacaacactttataatctaaataaaaggttttagttgaagatgtcattccattgctctcaaa |
18646667 |
T |
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| Q |
101 |
tattaatacactc |
113 |
Q |
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| T |
18646666 |
tattaatacactc |
18646654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 361 - 483
Target Start/End: Complemental strand, 18646647 - 18646525
Alignment:
| Q |
361 |
tttgtgttcactattttatgcttgttttgattgtgttggtggtatcaccttttcaccaattacgtgcctctatgaaccatgtactcatataggatatatt |
460 |
Q |
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||||||||| | ||||||| |||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| | |
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| T |
18646647 |
tttgtgttccccattttattcttgttttgattgtgtagttggtatcaccttttcaccaattacgtgcctatatgaaccatgtactcatatatgatatact |
18646548 |
T |
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| Q |
461 |
ataatcgatgaagtaattaaaaa |
483 |
Q |
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||| || |||||||||||||| |
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| T |
18646547 |
atagtcaccgaagtaattaaaaa |
18646525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 18650843 - 18650803
Alignment:
| Q |
73 |
ttgaagatatccttgcattactctcaaatattaatacactc |
113 |
Q |
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| T |
18650843 |
ttgaagatgtcattgcattactctcaaatattaatacactc |
18650803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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