View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13061_low_18 (Length: 565)
Name: NF13061_low_18
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 8022434 - 8022184
Alignment:
| Q |
11 |
cagagaaacagggtgttggaagcacaaaacatgcttctgctgaacatgttttggttggtttgttaaatgctagagatcatgtcaaccatgatgtccatca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8022434 |
cagagaaacagggtgttggaagcacaaaacatgcttctgctgaacatgttttggttggtttgctaaatgctagagatcatgtcaaccatgatgtccatca |
8022335 |
T |
|
| Q |
111 |
taggctatggaagcctgttttacaaagtattcctgagcttaattaattaggttcaaaattggtggtggtggggtgtgtatagtagaagttggttgagaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8022334 |
taggctatggaagcctgttttacaaagtattcctgagcttaattaattaggttcaaaattggtggtggtggggtgtgtatagtagaagttggttgagaaa |
8022235 |
T |
|
| Q |
211 |
agtttaggaagtttgtacttgtacaaaatcagaactaagctatactcaaca |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8022234 |
agtttaggaagtttgtacttgtacaaaatcagaactaagctatactcaaca |
8022184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 314 - 471
Target Start/End: Complemental strand, 8022131 - 8021974
Alignment:
| Q |
314 |
gtaagatatatatagaggttgagaatgtgttatttctatatttttatgattgtatataggttaaaatttaggttaagttaccaacaatattttgtcaaag |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8022131 |
gtaagatatatatagaggttgagaatgtgttatttctatatttttatgattgtatataggttaaaatttaggttaagttaccaacaatattttgtcaaag |
8022032 |
T |
|
| Q |
414 |
tggtaaggggtgtaaatcttttaagcatgtggtaataggtttgaactctgccaccttc |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8022031 |
tggtaaggggtgtaaatcttttaagcatgtggtaataggtttgaactctgccaccttc |
8021974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 477 - 546
Target Start/End: Complemental strand, 8021928 - 8021859
Alignment:
| Q |
477 |
ttcataggttctcttaattagattaattaccgctaaaactttgtatctataacttgtcaattgttttgaa |
546 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8021928 |
ttcataggttctcttacttagattaattatcgctaaaactttgtatttataacttgtcaattgttttgaa |
8021859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University