View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_19 (Length: 559)
Name: NF13061_low_19
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_19 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 69 - 547
Target Start/End: Original strand, 33680570 - 33681054
Alignment:
| Q |
69 |
gttatatgaaaagaacgtaacaaccgtatcttaaaaaatgcggtgtctgaaccatgtaacctttttgacaaagtgaagctgaatt-ttttatgtggttga |
167 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
33680570 |
gttatatgaaaagaacgtaacaaccgtatcttaaaaaatgcggtgtctgaaccatgtaacctttttgacaaagtgaaactgaattcttttatgtggttga |
33680669 |
T |
|
| Q |
168 |
aatcaaatcagcctctcaatataagtgtttccatgtaattgtttattattcgctttctcttcaggtgcctatcagtgtggcataaactgtgactttgtac |
267 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||| |
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| T |
33680670 |
aatcaaatcagcctctcagcataagtgtttccacgtaattgtttattattcgctttctctttaggtgcttctcagtgtggcataaactgtgactttgtac |
33680769 |
T |
|
| Q |
268 |
atttctgagtgag--tctctctcagcacgcctcgtgcggggggattcactcttggtttaatattatattccattttaatttgtt---nnnnnnnnnttag |
362 |
Q |
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| T |
33680770 |
atttctgagtgagtctctctctcagtacgccttgtgcggggtgattcactcttggtttaatattatattccattttgacttcttaaaaaaaaaaaattag |
33680869 |
T |
|
| Q |
363 |
acaatcacaacgatgcaatataaatgccgcaactttcaaataaataaatttgtaccataatctttttctaatctcataagtcatactataggtgcaatat |
462 |
Q |
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| T |
33680870 |
acaatcacaacgatgcagtataaatgccgcaactttcaaataaataaatttgtaccataatctttttctaatctcataagtcatactataggtgcaatat |
33680969 |
T |
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| Q |
463 |
atatagttaagtgatcgaccgattcacccagcatttgtattggtttctagttgaaatataaatgccgtttatcatggtggatatt |
547 |
Q |
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| T |
33680970 |
atatagttaagtgatcgaccgactcacccagcatttgtattggtttctagttgaaatataaatgccgtttatcatggtggatatt |
33681054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 33678418 - 33678472
Alignment:
| Q |
18 |
catatgacttgtttcaatacttgtttgactgatactcctgctaaccatttagtta |
72 |
Q |
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| T |
33678418 |
catatgacttgtttcaatacttgtttgactgatactcctgctaaccatttagtta |
33678472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 180
Target Start/End: Complemental strand, 20114646 - 20114537
Alignment:
| Q |
72 |
atatgaaaagaacgtaacaaccgtatcttaaaaaatgcggtgtctgaaccatgtaacctttttgacaaagtgaagctgaatt-ttttatgtggttgaaat |
170 |
Q |
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| T |
20114646 |
atatggaaagaacgaaacaaccgcagcttaaaaaatgtggcttatgatccgtgtaccctttctgacaaagtgaagttgaattcgtttatgtggttgaaaa |
20114547 |
T |
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| Q |
171 |
caaatcagcc |
180 |
Q |
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| T |
20114546 |
caaatcagcc |
20114537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 349
Target Start/End: Original strand, 37124880 - 37124942
Alignment:
| Q |
287 |
tcagcacgcctcgtgcggggggattcactcttggtttaatattatattccattttaatttgtt |
349 |
Q |
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| T |
37124880 |
tcagcacgccttgtgcagagtgaatcacttttggtttaatattatattccattttgatttgtt |
37124942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 248033 - 248088
Alignment:
| Q |
294 |
gcctcgtgcggggggattcactcttggtttaatattatattccattttaatttgtt |
349 |
Q |
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| T |
248033 |
gccttgtgcggagcgaatcacttttggtttaatattatattccattttgatttgtt |
248088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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