View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_20 (Length: 550)
Name: NF13061_low_20
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 79 - 536
Target Start/End: Complemental strand, 962246 - 961788
Alignment:
| Q |
79 |
cttaccttggattatgttttttctattacatagtaatgttacatcatgttcatgctcgtgtctttcgcaatagtaatgcgcattttctttttatcttaac |
178 |
Q |
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| T |
962246 |
cttaccttggattatgttttttctattacatagtaatgttacatcatgctcatgctcgtgtcttttgcaatagtaatgcgcattttctttttatcttaac |
962147 |
T |
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| Q |
179 |
cctccgattcgttagagaaaaatggtcattgtaatatgaagttcgaccgaaaagtaa-ttaaagtctgattaatgattgtttcagtcagaatttaaactc |
277 |
Q |
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| T |
962146 |
cctccgattcgttagagaaaaaaggtcattgtaatatgaagttcgactgaaaaataaattaaagtctgattaattattgttttagtcagaatttaaactc |
962047 |
T |
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| Q |
278 |
agattctttcaaatgattcgtacttaactgaagtttgttagtcagttgaactcaattacttagttgtcaacatgcttaataatacaacttacaccatata |
377 |
Q |
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| T |
962046 |
aaattcttccaaatgattcatacttaactgaagttcgttggtcagttaaactcaatcacttagctgtcttcatgcttaataatacaacttccaccatata |
961947 |
T |
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| Q |
378 |
ctatctttggttatttttaattaattatgaaattgtgcaaatttaactggtgttcacattaaatgcgtataagggagtgaaatagtaaaaataggtaccc |
477 |
Q |
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| T |
961946 |
ctatctttggttatttttaattaattatgaaattgtgcaaatttaactggtgttcacattaaatgtgtataagggagtgaaatagtaaaaataggtaccc |
961847 |
T |
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| Q |
478 |
tagtttagtcttcatgttcacaatgtggaatggacacaaaaggaatgtgatgtctttat |
536 |
Q |
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| T |
961846 |
tagtttagtcttcatgttcacaatgtggaatggacacaaaaggaatgtgatgtctttat |
961788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 962322 - 962284
Alignment:
| Q |
1 |
gtggcacatccctaatgtttagtgcacatttttcttttg |
39 |
Q |
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| T |
962322 |
gtggcacatccctaatgtttagtgcacatttttcttttg |
962284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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