View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_21 (Length: 548)
Name: NF13061_low_21
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 12 - 529
Target Start/End: Original strand, 2919087 - 2919594
Alignment:
| Q |
12 |
aagaagcatcgatacttatataactcaaag-----aaacattttaatattatcaattatcaaggtcactattacaatgtagtgcacacatattatataac |
106 |
Q |
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| T |
2919087 |
aagaagcatcgatacttatataactcaaagtacaaaaacattttaatattatcaa-------ggtcactattacaatgtagtgcacacatattatataac |
2919179 |
T |
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| Q |
107 |
tcaatcacaaggttcaatcctagcttatactaggcattacccttaatcaaattagggaattagggaaggaaaattgaaaatatgggcacagaagccaccc |
206 |
Q |
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| T |
2919180 |
tcaagcacaaggttcaatcctagcttatactaagcattacccttaatcaaatt--------agggaaggaaaattgaaaatatgggcacagaagccaccc |
2919271 |
T |
|
| Q |
207 |
caaagcttccaataattgacttcaataacctcaacttggaagccaagagtcctaattgggagttagtgaagtcccaagtctataaggcattagtagagta |
306 |
Q |
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| T |
2919272 |
caaagcttccaataattgacttcaataacctcaacttggaagccaagagtcctaattgggagttagtgaagtcccaagtctataaggcattagtagagta |
2919371 |
T |
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| Q |
307 |
tggttgctttgaagcagtttttgataaagttcctttagaccttcgcaaagccatatttgcttcactacaagagctctttgatctccctttagaaaccaag |
406 |
Q |
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| T |
2919372 |
tggttgctttgaagcagtttttgataaagttcctttagaccttcgcaaagccatatttgcttcactacaagagctctttgatctccctttagaaaccaag |
2919471 |
T |
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| Q |
407 |
ctactcaatgtgtctaagaagccttatcatggttatgttggtcaatatcctatgattccactttttgagagcatgggcattgatgatgcaaatatcttag |
506 |
Q |
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| T |
2919472 |
ctactcaatgtgtctaagaagccttatcatggttatgttggtcaatatcctatgattccactttttgagagcatgggcattgatgatgcaaatatcttag |
2919571 |
T |
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| Q |
507 |
agaaagtagacagtatgaccaac |
529 |
Q |
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| T |
2919572 |
agaaagtagacagtatgaccaac |
2919594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 61 - 528
Target Start/End: Original strand, 2933924 - 2934383
Alignment:
| Q |
61 |
attatcaaggtcactattacaatgtagtgcacacatattatataactcaatcacaaggttcaatcctagcttatactaggcattacccttaatcaaatta |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
2933924 |
attatcaaggtcactattacaatgtagtgcacacatattatataactcaatcacaaggttcaatcctagcttatactaagcattacccttaatcatatta |
2934023 |
T |
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| Q |
161 |
gggaattagggaaggaaaattgaaaatatgggcacagaagccaccccaaagcttccaataattgacttcaataacctcaacttggaagccaagagtccta |
260 |
Q |
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| T |
2934024 |
--------gggaaggacaggtgaaaatatgggatcagaacacactcaaaagcttccactaattgacttcaataacctcaactttgaagccaaaaatccca |
2934115 |
T |
|
| Q |
261 |
attgggagttagtgaagtcccaagtctataaggcattagtagagtatggttgctttgaagcagtttttgataaagttcctttagaccttcgcaaagccat |
360 |
Q |
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| T |
2934116 |
attgggagttagtgaagtcccaagtctataaggcattagtagagtatggttgctttgaagcaatttttgataaagttcctttagaccttcgcaaagccat |
2934215 |
T |
|
| Q |
361 |
atttgcttcactacaagagctctttgatctccctttagaaaccaagctactcaatgtgtctaagaagccttatcatggttatgttggtcaatatcctatg |
460 |
Q |
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|||| ||||| || ||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||| |||| ||| |||||||||||||| | |
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| T |
2934216 |
atttacttcaatagaagagctctttgatctccctttagagactaagctactcaatgtgtctaataagccttatgatggctatattggtcaatatcctgta |
2934315 |
T |
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| Q |
461 |
attccactttttgagagcatgggcattgatgatgcaaatatcttagagaaagtagacagtatgaccaa |
528 |
Q |
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||||||||| ||||||||||| |||||| |||||||||||||||||||||||| | || |||||||| |
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| T |
2934316 |
gttccactttatgagagcatggccattgaggatgcaaatatcttagagaaagtaaaaagcatgaccaa |
2934383 |
T |
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