View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_29 (Length: 520)
Name: NF13061_low_29
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 29 - 508
Target Start/End: Complemental strand, 29025194 - 29024714
Alignment:
| Q |
29 |
tgtaggtatcatacgaaaaacaaaaactataagagaatgcttgcatcgtttctgcggagagtgcatagagaagtgcatgcgctctgggtttgtctataaa |
128 |
Q |
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|||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29025194 |
tgtaggtatcttacggaaaacaaaaactataagaaaatgcttgcatcgtttctgcggagagtgcatagagaagtgcatgcgctctgggtttgtccataaa |
29025095 |
T |
|
| Q |
129 |
cttcaaccatctttacttatcaatatttcacatatttttagtttgaactgtattgatt-atttagcttttatatgcagtaaaaatgaatgtcctatttgt |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29025094 |
cttcaaccatctttacttatcaatatttcacatatttttagtttgaactgtattgatttatttagcttttatatgcagtaaaaatgaatgtcctatttgt |
29024995 |
T |
|
| Q |
228 |
cgcacacattgtcctacccaactctcactgagagatgatccaaattatgatgcattgattgctttgttgtgtccagatattgacaagtttgagaaagagg |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29024994 |
cgcacacattgtcctacccaactctcactgagagatgatccaaattatgatgcattgattgctttgttgcatccagatattgacaagtttgagaaagagg |
29024895 |
T |
|
| Q |
328 |
taagatatacagatttattttgttttacataaacaaaatattatatcttaatgaaaggctaatcaataaggttatgtttgacataggaattggctttgct |
427 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||| ||| |||||| ||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
29024894 |
taagatatacatatttatttcattttacataaacaaaatattataacttcatgaaaaactaattaataaggttatgttcgacataggaattggctttgct |
29024795 |
T |
|
| Q |
428 |
taaagaagagtttccccatctatctttagtggagaaatcagtggaagttgttgatcgtgacgaagaagaagatttttctga |
508 |
Q |
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| T |
29024794 |
taaagaagagtttccccatctatctatagtggaaaaatcagtggaagttgttgatcgtgacgaagaagaagatttttctga |
29024714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 23 - 445
Target Start/End: Complemental strand, 36067873 - 36067428
Alignment:
| Q |
23 |
tatatgtgtaggtatcatacgaaaaacaaaaactataagagaatgcttgcatcgtttctgcggagagtgcatagagaagtgcatgcgctctgggtttgtc |
122 |
Q |
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|||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||| |||||||||| | ||||||||||||| ||||||| || |
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| T |
36067873 |
tatatgtgtaggaatcattcggaaaacaaaaactataagagaatgtctgcatcgtttctgcgaagagtgcataaacaagtgcatgcgctttgggtttttc |
36067774 |
T |
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| Q |
123 |
tataaacttcaaccatctttacttatcaatatttcacatatttttagtttgaactgtattgattatttagcttttatat------------------gca |
204 |
Q |
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| |||||| ||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||| | | |||| ||| |
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| T |
36067773 |
cttgaacttccaccatatttacttatcaatattttacatatttttagtttgaactgtgttgattatttagttgtaatatattttcttgtcatcaattgca |
36067674 |
T |
|
| Q |
205 |
gtaaaaatgaatgtcctatttgtcgcacacattgtcctacccaactctcactgagagatgatccaaattatgatgcattgattgctttgttgtgtccaga |
304 |
Q |
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| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || |
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| T |
36067673 |
gaaaaaatgaatgtcctgtttgtcgcacacattgtcctgaccaactctcactgagagatgatccaaattatgatgcattgattgctttgctctgtccgga |
36067574 |
T |
|
| Q |
305 |
tattgacaagtttgagaaagaggtaagatatacagatttattttgttttacataaacaaaatattatatcttaatgaaaggctaatcaataaggttatgt |
404 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
36067573 |
tattgacaagtttgagaaagaggtaagatatacacatatatttcattttacataaacaaaatattttatcttaatgaaaatctaatcaataaggttatgt |
36067474 |
T |
|
| Q |
405 |
t-----tgacataggaattggctttgcttaaagaagagtttcccca |
445 |
Q |
| |
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| || ||||||||||| ||||||||||||||||||||||||| |
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| T |
36067473 |
tcggcatggcataggaattgactttgcttaaagaagagtttcccca |
36067428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 243 - 383
Target Start/End: Complemental strand, 35151966 - 35151826
Alignment:
| Q |
243 |
acccaactctcactgagagatgatccaaattatgatgcattgattgctttgttgtgtccagatattgacaagtttgagaaagaggtaagatatacagatt |
342 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| | | |||||||||||| |||||||||||||||||||||||| ||| |
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| T |
35151966 |
acccaactctcaccgagagatgatccaaattatgatgcattgattgctttgctccatttagatattgacaaatttgagaaagaggtaagatatacacatt |
35151867 |
T |
|
| Q |
343 |
tattttgttttacataaacaaaatattatatcttaatgaaa |
383 |
Q |
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||||| |||||||||||||||| ||| |||||||| |||| |
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| T |
35151866 |
tatttcattttacataaacaaaacattttatcttaacgaaa |
35151826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 35152147 - 35152090
Alignment:
| Q |
125 |
taaacttcaaccatctttacttatcaatatttcacatatttttagtttgaactgtatt |
182 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
35152147 |
taaacttccaccatctttacttatcaatatttcacatatttttagtttggattgtatt |
35152090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 203 - 330
Target Start/End: Complemental strand, 35139663 - 35139536
Alignment:
| Q |
203 |
cagtaaaaatgaatgtcctatttgtcgcacacattgtcctacccaactctcactgagagatgatccaaattatgatgcattgattgctttgttgtgtcca |
302 |
Q |
| |
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|||||| |||||||||||| ||| || ||||||||| ||| || || |||||||||||| || ||||| |||||||| ||||||||| | | |||| |
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| T |
35139663 |
cagtaacaatgaatgtcctgcttgccgaacacattgtgctagccgacgctcactgagagacgacccaaactatgatgctttgattgctgctatctatcca |
35139564 |
T |
|
| Q |
303 |
gatattgacaagtttgagaaagaggtaa |
330 |
Q |
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||||||||||||| |||| ||||||||| |
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| T |
35139563 |
gatattgacaagtatgaggaagaggtaa |
35139536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 210 - 335
Target Start/End: Complemental strand, 21547879 - 21547754
Alignment:
| Q |
210 |
aatgaatgtcctatttgtcgcacacattgtcctacccaactctcactgagagatgatccaaattatgatgcattgattgctttgttgtgtccagatattg |
309 |
Q |
| |
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|||||||| |||| ||||| ||||||| ||||| || || ||||||||||||||||||| |||||||| |||||||| | | ||| |||| | |
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| T |
21547879 |
aatgaatgccctacatgtcgtacacattttcctagccgacgtgcactgagagatgatccaaactatgatgctttgattgcagctatttacccaaatatcg |
21547780 |
T |
|
| Q |
310 |
acaagtttgagaaagaggtaagatat |
335 |
Q |
| |
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||||| |||||||||||||||||||| |
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| T |
21547779 |
acaaggttgagaaagaggtaagatat |
21547754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 21548073 - 21547987
Alignment:
| Q |
23 |
tatatgtgtaggtatcatacgaaaaacaaaaactataagagaatgcttgcatcgtttctgcggagagtgcatagagaagtgcatgcg |
109 |
Q |
| |
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|||||||||||| ||||| |||||||||| |||| || |||||| ||||||| || ||| || ||||||||| ||||||||||| |
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| T |
21548073 |
tatatgtgtaggcatcattcgaaaaacaagaacttcaatggaatgcatgcatcgcttttgcaaagtgtgcatagacaagtgcatgcg |
21547987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 35139848 - 35139774
Alignment:
| Q |
23 |
tatatgtgtaggtatcatacgaaaaacaaaaactataagagaatgcttgcatcgtttctgcggagagtgcataga |
97 |
Q |
| |
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|||||||||||| ||||| |||||||||| ||| ||| || ||||||||||| || ||| ||||||||||||| |
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| T |
35139848 |
tatatgtgtaggcatcattcgaaaaacaagaaccgtaatggagtgcttgcatcgcttttgcagagagtgcataga |
35139774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 442
Target Start/End: Complemental strand, 35151650 - 35151617
Alignment:
| Q |
409 |
cataggaattggctttgcttaaagaagagtttcc |
442 |
Q |
| |
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||||||||||| |||||||||||||||||||||| |
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| T |
35151650 |
cataggaattgactttgcttaaagaagagtttcc |
35151617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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