View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_30 (Length: 515)
Name: NF13061_low_30
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 39366115 - 39366566
Alignment:
| Q |
1 |
ttgcatcaccgattttcttctctcttttatttttgaagnnnnnnnnnnncttttctagttattataaatttttgtataatacagtgcagcaagattaaaa |
100 |
Q |
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| T |
39366115 |
ttgcatcaccgattttcttctct--tttatttttgaagaaaaaaaaaaacttttctagttattataaatttttgtataatacagtgcagcaagattaaaa |
39366212 |
T |
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| Q |
101 |
--ttatgtattttgtacaattaaaaatgtactagtgatgaagcttgatcttttnnnnnnnngctatagggaagatttctactcgacatatactctactat |
198 |
Q |
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| T |
39366213 |
aattatgtattttgtacaattaaaaatgtactggtgatgaagcttgatcttttaaaaaaaaactatagagaagatttctactcgacatatactctaatat |
39366312 |
T |
|
| Q |
199 |
gattttcctaactcctctaacatacgattctctttgaccaagaaaggaaactcactaatgtgtttttggctcagccacagctcatgtttcagaaccctag |
298 |
Q |
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| T |
39366313 |
gattttcctaactcctctaacatatgattctctttgaccaagaaaggaaactcactaatgtgtttttggctcagccacagctcatgtttcagaaccctag |
39366412 |
T |
|
| Q |
299 |
actagatgggattattatcctaacatctctagca----tgtgattcatatcatgtgtcacgcaatataccaaataaatgcaactgtctttaggctaaaaa |
394 |
Q |
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| T |
39366413 |
actagatgggattattatcctaacatctcaagcatatgtatgattcatatcatgtgtcacgcaatataccaaataaatgcaactgtctttaagctaaaaa |
39366512 |
T |
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| Q |
395 |
tagcatactgaattactgattattaattaacccatagcctatgctattgttaactatt |
452 |
Q |
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| T |
39366513 |
tagcatactgaattactgatt----attaacccatagccgatgctattgttaattatt |
39366566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 495
Target Start/End: Original strand, 39366594 - 39366638
Alignment:
| Q |
451 |
ttgtgatgtgatgcagcattgtgttttggtatccacataagcaca |
495 |
Q |
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| T |
39366594 |
ttgtgatgtgatgctgcattgtgtttgggtgtccacataagcaca |
39366638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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