View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13061_low_31 (Length: 501)
Name: NF13061_low_31
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_31 |
 | |
|
| [»] scaffold2084 (1 HSPs) |
| | |
|
| [»] scaffold0971 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 11 - 485
Target Start/End: Original strand, 40550743 - 40551216
Alignment:
| Q |
11 |
catagggtatagataacaatatagatcactgaatagccaagctcacaagccagttccgatgaaaatcagacagaattttgattacnnnnnnnnnnacaaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40550743 |
catagggtatagataacaatatagatcactgaatagccaagttcacgagccagttccgatgaaaatcagacagaattttgattacttttttttt-acaaa |
40550841 |
T |
|
| Q |
111 |
agtcacctcatattgttaattaataataatttgttagatgaatatcagaatatcaatgagctaaagaagaagctacccttgattacctatatgcatttta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40550842 |
agtcacctcatattgttaattaataataatttgttagatgaatatcagaatatcaatgagctaaagaagaagctacccttgattacctatatgcatttta |
40550941 |
T |
|
| Q |
211 |
ctctcaataattagagcaaacagttagcccagcaaacaaaataaattcaagacacttccatcagcctcaatataacctccaaactaaacaaagctatatc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40550942 |
ctctcaataattagagcaaacagttagcccagcaaacaaaataaattcaagacacttccatcagcctcaatataacctccaaactaaacaaagctatatc |
40551041 |
T |
|
| Q |
311 |
atggtcaggtgttaggacaattgtctggtcactcatcatctgaataacatgctaaattcggaaatgcagcttgatgcgacgaggtagccaccatgttact |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40551042 |
atggtcaggtgttaggacaattgtctggtcactcatcatctgaataacatgctaaattcggaaatgcagcttgatgcgacgaggtagccaccatgttact |
40551141 |
T |
|
| Q |
411 |
gctattgggcccaaattcggataagttagcaggagccacatctgacaaacgggaaataacgttcggggatgttat |
485 |
Q |
| |
|
|| ||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40551142 |
gcaattaggcccaaatccgaataagttagcaggagccacatctgacaaacgggaaataacgttcggggatgttat |
40551216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 335 - 469
Target Start/End: Original strand, 40568288 - 40568422
Alignment:
| Q |
335 |
ctggtcactcatcatctgaataacatgctaaattcggaaatgcagcttgatgcgacgaggtagccaccatgttactgctattgggcccaaattcggataa |
434 |
Q |
| |
|
|||||||||| |||||||| ||||| |||||||| || ||||||||||||| |||||| | ||||||| ||||||||||||||||| || |||||| |
|
|
| T |
40568288 |
ctggtcactcgtcatctgataaacatactaaattctgagatgcagcttgatgtgacgagttggccaccacactactgctattgggcccagatctggataa |
40568387 |
T |
|
| Q |
435 |
gttagcaggagccacatctgacaaacgggaaataa |
469 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||| |
|
|
| T |
40568388 |
gttagccggagccacatctgacaaacgtgaaataa |
40568422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 126 - 264
Target Start/End: Original strand, 40568143 - 40568282
Alignment:
| Q |
126 |
ttaattaat-aataatttgttagatgaatatcagaatatcaatgagct-aaagaagaagctacccttgattacctatatgcattttactctcaataatta |
223 |
Q |
| |
|
||||||||| ||||||||| ||||| |||||| ||||||||||||||| ||||| |||||| || |||||||||||||| ||||||||| |||||||||| |
|
|
| T |
40568143 |
ttaattaattaataatttgatagataaatatcggaatatcaatgagcttaaagatgaagctgcc-ttgattacctatatacattttactatcaataatta |
40568241 |
T |
|
| Q |
224 |
ga-gcaaacagttagcccagcaaacaaaataaattcaagaca |
264 |
Q |
| |
|
| ||||||||||||||||| ||| || | |||||||||||| |
|
|
| T |
40568242 |
aatgcaaacagttagcccagtaaa-aataaaaattcaagaca |
40568282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2084 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold2084
Description:
Target: scaffold2084; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 331 - 476
Target Start/End: Complemental strand, 810 - 665
Alignment:
| Q |
331 |
ttgtctggtcactcatcatctgaataacatgctaaattcggaaatgcagcttgatgcgacgaggtagccaccatgttactgctattgggcccaaattcgg |
430 |
Q |
| |
|
||||||||| |||||||||| || ||||| ||||||||||| |||||||| |||||||| || ||||||| | |||||||||||||| |||||| || |
|
|
| T |
810 |
ttgtctggtaactcatcatccgataaacatactaaattcggagatgcagctagatgcgacaagttagccactacgttactgctattggatccaaatctgg |
711 |
T |
|
| Q |
431 |
ataagttagcaggagccacatctgacaaacgggaaataacgttcgg |
476 |
Q |
| |
|
|||||||| ||||||||||| |||||||| |||||||| ||||| |
|
|
| T |
710 |
ataagttattgggagccacatccgacaaacgtgaaataacattcgg |
665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0971 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0971
Description:
Target: scaffold0971; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 470
Target Start/End: Original strand, 2416 - 2545
Alignment:
| Q |
341 |
actcatcatctgaataacatgctaaattcggaaatgcagcttgatgcgacgaggtagccaccatgttactgctattgggcccaaattcggataagttagc |
440 |
Q |
| |
|
|||||||||| || ||||| ||||||||||| ||||| || ||||||| | ||||||| | |||||||||||||| || |||| |||||| ||| |
|
|
| T |
2416 |
actcatcatcagataaacatactaaattcggagatgcatctagatgcgataacttagccactacgttactgctattggtccgaaatctggataacttatt |
2515 |
T |
|
| Q |
441 |
aggagccacatctgacaaacgggaaataac |
470 |
Q |
| |
|
|||| |||||| |||||| | |||||||| |
|
|
| T |
2516 |
gggagacacatcggacaaatgtgaaataac |
2545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University