View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_33 (Length: 467)
Name: NF13061_low_33
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 20 - 456
Target Start/End: Original strand, 42638914 - 42639354
Alignment:
| Q |
20 |
gtattatgatatcattttcatgagtccaacattatgatatcatttattcaaatatatataccaagtat----tgtatggctagctagcttagcaagtaag |
115 |
Q |
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| T |
42638914 |
gtattatgatatcattttcatgagtccaacattatgatatcatttattcaaatatatatactaagtatatattgtatggctagctagcttagcaagtaag |
42639013 |
T |
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| Q |
116 |
gttatcaccaggagcaacacccaactcactacaatattgagtgtagtaaccaacacgagtctgaactgtggatgggttagcaccatcacattcaagtcga |
215 |
Q |
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| T |
42639014 |
gttatcaccaggagcaacacccaactcactacaatattgagtgtagtaaccaacacgagtctgaactgtggatgggttagcaccatcacattcaagtcga |
42639113 |
T |
|
| Q |
216 |
ccattaatggctctaatggttgcaccaaaaccttggttgatgacaccgtgcacattattcatccaataccataatgctgtcttgaaggacactgtaggat |
315 |
Q |
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| T |
42639114 |
ccattaatggctctaatggttgcaccaaaaccttggttgatgacaccgtgcacgttattcatccaataccataatgctgtcttgaaggacactgtaggat |
42639213 |
T |
|
| Q |
316 |
cattggccactgtttcaggtgagttcaatccatcaaaaccattgtctcttccagctggtccatagttgtagttccaagaaagttgaatcggtccacgacc |
415 |
Q |
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| T |
42639214 |
cattggccactgtttcaggtgagttcaatccatcaaaaccattgtctcttccagctggtccatagttgtagttccaagatagttgaatcggtccacgacc |
42639313 |
T |
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| Q |
416 |
atagtaacctttgttaggggcacatggccactctgtgttgc |
456 |
Q |
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| T |
42639314 |
atagtaacctttgttaggggcacatggccactctgtgttgc |
42639354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 85 - 457
Target Start/End: Original strand, 42633903 - 42634278
Alignment:
| Q |
85 |
tattgtatggctagctagcttagcaagtaaggttatcaccaggagcaacacccaactcactacaatattgagtgtagtaaccaacacgagtctgaactgt |
184 |
Q |
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| T |
42633903 |
tattgtatggattgctagcttagcagttaagcttatcaccaggagcaacacccagttgactacaatattgagtgtagtaatcaacacgagccttaactgt |
42634002 |
T |
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| Q |
185 |
ggatgggttagcaccatcacattcaagtcgaccattaatggctctaatggttgcaccaaaaccttg---gttgatgacaccgtgcacattattcatccaa |
281 |
Q |
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| T |
42634003 |
gttggggtcaacaccgtcacattcaagtcgaccattaatggctctaaccgttgcaccaaagccttgttggttcatgacattgtgcacatgattcatccaa |
42634102 |
T |
|
| Q |
282 |
taccataatgctgtcttgaaggacactgtaggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtctcttccagctggtccatagt |
381 |
Q |
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| T |
42634103 |
taccataatgctgtcttgaaggacactaaaggatcattggccactgtttcaggagagttcaattcatcaaaaccactgtcctttccagctggtccgtaat |
42634202 |
T |
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| Q |
382 |
tgtagttccaagaaagttgaatcggtccacgaccatagtaacctttgttaggggcacatggccactctgtgttgct |
457 |
Q |
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| T |
42634203 |
taaagttccaagataattgaatcggtccacggccatagtatcctttgttaggggcacacgggtactctgtgttgct |
42634278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 85 - 252
Target Start/End: Original strand, 42628384 - 42628551
Alignment:
| Q |
85 |
tattgtatggctagctagcttagcaagtaaggttatcaccaggagcaacacccaactcactacaatattgagtgtagtaaccaacacgagtctgaactgt |
184 |
Q |
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| T |
42628384 |
tattgtatggattgctagcttagaaagtaagcttatcaccaggagcaacacccaattgactacaatattgagtgtagcaaccaacacgagtctgaactgt |
42628483 |
T |
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| Q |
185 |
ggatgggttagcaccatcacattcaagtcgaccattaatggctctaatggttgcaccaaaaccttggt |
252 |
Q |
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| T |
42628484 |
agttggcttagcaccatcacattcaagtcgaccattaatggctctagtggttgcaccaaagccttggt |
42628551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 311 - 361
Target Start/End: Original strand, 42628588 - 42628638
Alignment:
| Q |
311 |
aggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtc |
361 |
Q |
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| T |
42628588 |
aggatcattggccactgtttcaggagagttcaatccatcagaaccattgtc |
42628638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 441
Target Start/End: Original strand, 42628651 - 42628694
Alignment:
| Q |
398 |
ttgaatcggtccacgaccatagtaacctttgttaggggcacatg |
441 |
Q |
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| T |
42628651 |
ttgaatcggtccacaaccatagaaccctttgttaggggcacatg |
42628694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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