View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13061_low_35 (Length: 453)

Name: NF13061_low_35
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13061_low_35
NF13061_low_35
[»] chr5 (15 HSPs)
chr5 (18-435)||(13454128-13454528)
chr5 (29-169)||(13388972-13389112)
chr5 (40-163)||(13451069-13451192)
chr5 (33-169)||(13385151-13385287)
chr5 (33-181)||(13419639-13419787)
chr5 (24-154)||(13413285-13413415)
chr5 (26-148)||(13426523-13426645)
chr5 (73-153)||(13447230-13447310)
chr5 (264-370)||(13413963-13414069)
chr5 (36-169)||(13393379-13393512)
chr5 (36-139)||(13373384-13373487)
chr5 (264-370)||(13393167-13393273)
chr5 (55-148)||(13379199-13379292)
chr5 (259-367)||(13426918-13427026)
chr5 (292-334)||(13379454-13379496)
[»] chr4 (3 HSPs)
chr4 (96-173)||(47601524-47601601)
chr4 (275-309)||(13238328-13238362)
chr4 (275-309)||(13238548-13238582)
[»] scaffold0131 (2 HSPs)
scaffold0131 (275-309)||(22066-22100)
scaffold0131 (275-309)||(22286-22320)
[»] chr1 (2 HSPs)
chr1 (275-309)||(27343899-27343933)
chr1 (275-309)||(27344119-27344153)


Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Original strand, 13454128 - 13454528
Alignment:
Q  18 agtgtcaattggggacagtaattctcaagattatcaacacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13454128 agtgtcaattggggacagtaattctcaagattatcaacacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactt 13454227  T
Q  118 tgaactttttcactttgcttcccacttctgtaactatgccaacaatttcatgtctgcatatatttttacaccaattagattcaaattgaatttatatctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13454228 tgaactttttcactttgcttcccacttctgtaactatgccaacaatttcatgtctgcatatatttttacaccaattagattcaaattgaatttatatctt 13454327  T
Q  218 gatttatatgtttggnnnnnnnaaaatgcagtaaaattagaaagcttacccgggaactagtggatagttcgtagtgccccattcattcttcgccttatga 317  Q
    |||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13454328 gattt-----------------aaaatgcagtaaaattagaaagcttacccgggaactagtggatagttcgtagtgccccattcattcttcgccttatga 13454410  T
Q  318 aggtccgagtgacatattccacaatacaacactcttaatgctacgtctttttcgcatatttccctgaaaatttaacgtactaaattagattgaattatga 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13454411 aggtccgagtgacatattccacaatacaacactcttaatgctacgtctttttcgcatatttccctgaaaatttaacgtactaaattagattgaattatga 13454510  T
Q  418 taaaaacttccttctctc 435  Q
    ||||||||||||||||||    
T  13454511 taaaaacttccttctctc 13454528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 29 - 169
Target Start/End: Complemental strand, 13389112 - 13388972
Alignment:
Q  29 gggacagtaattctcaagattatcaacacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttc 128  Q
    |||||||||||| |||||||| ||||||||||||||||||||  |||| |||||||||| | | || ||||||||| |||||||||| ||||||||||      
T  13389112 gggacagtaattttcaagattgtcaacacaattttgacatgatcgacatgaatcaaccatgtagccaacacctactttgtctccaacattgaacttttct 13389013  T
Q  129 actttgcttcccacttctgtaactatgccaacaatttcatg 169  Q
    |||||||||||||| | ||| ||||| |||||||| |||||    
T  13389012 actttgcttcccacctttgtcactataccaacaatctcatg 13388972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 163
Target Start/End: Original strand, 13451069 - 13451192
Alignment:
Q  40 tctcaagattatcaacacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactttgcttcc 139  Q
    ||||||| |||| | |||||||||| ||||| |||||||||||||| |||||||||||||  ||||||||| ||| ||||||||||  ||||||||||||    
T  13451069 tctcaaggttattagcacaattttggcatgattgacaagaatcaacgaagcatcccacactaactctgtcttcaattttgaactttaccactttgcttcc 13451168  T
Q  140 cacttctgtaactatgccaacaat 163  Q
     || | ||||||||| ||||||||    
T  13451169 aacctgtgtaactatcccaacaat 13451192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 33 - 169
Target Start/End: Complemental strand, 13385287 - 13385151
Alignment:
Q  33 cagtaattctcaagattatcaacacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactt 132  Q
    |||||||| |||||||| ||||||||||||||||| ||  |||| |||||||  | | | || ||||||||| |||||||||| ||||||||||  ||||    
T  13385287 cagtaattttcaagattgtcaacacaattttgacacgatcgacatgaatcaattatgtagccaacacctactttgtctccaacattgaacttttctactt 13385188  T
Q  133 tgcttcccacttctgtaactatgccaacaatttcatg 169  Q
    |||||||||| | ||| ||||| |||||||| |||||    
T  13385187 tgcttcccacctttgtcactataccaacaatctcatg 13385151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 33 - 181
Target Start/End: Original strand, 13419639 - 13419787
Alignment:
Q  33 cagtaattctcaagattatcaacacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactt 132  Q
    ||||||||||||||||  ||| |||||||||| |||||  |||| |||||||||| | |||||||||| ||| ||||||||||||| |||||||  ||||    
T  13419639 cagtaattctcaagatcgtcagcacaattttggcatgaacgacatgaatcaaccatgtatcccacaccaactttgtctccaactttaaacttttctactt 13419738  T
Q  133 tgcttcccacttctgtaactatgccaacaatttcatgtctgcatatatt 181  Q
    ||||||| || || || ||||| ||  ||| |||||| |||||| ||||    
T  13419739 tgcttccaacctcggttactatacccgcaagttcatgcctgcatttatt 13419787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 24 - 154
Target Start/End: Original strand, 13413285 - 13413415
Alignment:
Q  24 aattggggacagtaattctcaagattatcaacacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaact 123  Q
    |||| ||| ||||||||||||||||| |||  ||||| ||| |||||  |||| ||||||| |||| | || ||||||||| ||||||||||||| ||||    
T  13413285 aatttggggcagtaattctcaagattgtcattacaatcttggcatgatcgacatgaatcaatcaagtagccaacacctactttgtctccaactttaaact 13413384  T
Q  124 ttttcactttgcttcccacttctgtaactat 154  Q
    | | |||||||||||| |||||||| |||||    
T  13413385 tctccactttgcttcctacttctgttactat 13413415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 148
Target Start/End: Original strand, 13426523 - 13426645
Alignment:
Q  26 ttggggacagtaattctcaagattatcaacacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaacttt 125  Q
    |||||| ||||||||||||||||  ||  |||||||||  |||||  |||| |||||||||| | ||||||| |||||| ||||||||||||| ||||||    
T  13426523 ttgggggcagtaattctcaagatcttccgcacaattttcgcatgaacgacatgaatcaaccatgtatcccactcctactttgtctccaactttaaacttt 13426622  T
Q  126 ttcactttgcttcccacttctgt 148  Q
    |  ||||||||||| || |||||    
T  13426623 tctactttgcttccaacctctgt 13426645  T

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Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 73 - 153
Target Start/End: Original strand, 13447230 - 13447310
Alignment:
Q  73 gacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactttgcttcccacttctgtaacta 153  Q
    |||| |||||||||| | ||||||| |||||| ||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  13447230 gacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactttgcttcccacctctgttacta 13447310  T

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Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 264 - 370
Target Start/End: Original strand, 13413963 - 13414069
Alignment:
Q  264 tacccgggaactagtggatagttcgtagtgccccattcattcttcgccttatgaaggtccgagtgacatattccacaatacaacactcttaatgctacgt 363  Q
    ||||| ||||| |||||||||   | |||||||||||||||||| ||| |||| || || ||||||||||| ||||||||||||||  | |||||||| |    
T  13413963 tacccaggaacaagtggatagaaggaagtgccccattcattcttagccatatggagatcagagtgacatatcccacaatacaacaccttgaatgctacat 13414062  T
Q  364 ctttttc 370  Q
    |||||||    
T  13414063 ctttttc 13414069  T

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Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 169
Target Start/End: Complemental strand, 13393512 - 13393379
Alignment:
Q  36 taattctcaagattatcaacacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactttgc 135  Q
    |||||||||||||| ||  |||| ||||| ||||   |||| |||||||| |||||||||||||| ||| ||||||||| ||||||||| |  |||||||    
T  13393512 taattctcaagattttcctcacagttttggcatgcacgacacgaatcaactaagcatcccacacccactttgtctccaattttgaacttctctactttgc 13393413  T
Q  136 ttcccacttctgtaactatgccaacaatttcatg 169  Q
    |||| || || || ||||| ||| |||| |||||    
T  13393412 ttcctacctccgtcactataccagcaatctcatg 13393379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 139
Target Start/End: Original strand, 13373384 - 13373487
Alignment:
Q  36 taattctcaagattatcaacacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactttgc 135  Q
    |||||||| |||| |||| ||||| ||||||||||||| || ||  |||||| ||| || ||||||||  |||||||||||||||||||| ||||  |||    
T  13373384 taattctcgagatcatcaccacaactttgacatgagtggcaggatccaaccatgcaccctacacctaccttgtctccaactttgaactttgtcaccatgc 13373483  T
Q  136 ttcc 139  Q
    ||||    
T  13373484 ttcc 13373487  T

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Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 370
Target Start/End: Complemental strand, 13393273 - 13393167
Alignment:
Q  264 tacccgggaactagtggatagttcgtagtgccccattcattcttcgccttatgaaggtccgagtgacatattccacaatacaacactcttaatgctacgt 363  Q
    ||||| ||||||||||||||| | |   ||||||||||||||||   | ||||||| |||||||||||||| ||||||||||  ||| | ||||| || |    
T  13393273 tacccaggaactagtggataggtagacatgccccattcattctttatcatatgaagatccgagtgacatatcccacaatacagtactttaaatgccacat 13393174  T
Q  364 ctttttc 370  Q
    |||||||    
T  13393173 ctttttc 13393167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 148
Target Start/End: Original strand, 13379199 - 13379292
Alignment:
Q  55 cacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactttgcttcccacttctgt 148  Q
    ||||| |||||||||| || || ||  |||||| ||| |||||||| || || |||||||||||||  |||||||| ||||||||||| |||||    
T  13379199 cacaactttgacatgaatggcaggatccaaccatgcaccccacaccaaccctatctccaactttgatgtttttcaccttgcttcccacctctgt 13379292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 367
Target Start/End: Original strand, 13426918 - 13427026
Alignment:
Q  259 aagcttacccgggaactagtggatagttcgtagtgccccattcattcttcgccttatgaaggtccgagtgacatattccacaatacaacactcttaatgc 358  Q
    |||| ||||| ||||||| ||||||| | | | |||||||||||||||||  | |||| || || | ||||||||| ||||||||||||||  | |||||    
T  13426918 aagcataccctggaactaatggatagatggaattgccccattcattcttcatcatatggagatcagtgtgacatataccacaatacaacaccttgaatgc 13427017  T
Q  359 tacgtcttt 367  Q
    ||| |||||    
T  13427018 tacatcttt 13427026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 334
Target Start/End: Original strand, 13379454 - 13379496
Alignment:
Q  292 tgccccattcattcttcgccttatgaaggtccgagtgacatat 334  Q
    ||||||| |||||||||||| |||| |||||||||||||||||    
T  13379454 tgccccactcattcttcgccatatggaggtccgagtgacatat 13379496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 47601524 - 47601601
Alignment:
Q  96 acacctactctgtctccaactttgaactttttcactttgcttcccacttctgtaactatgccaacaatttcatgtctg 173  Q
    ||||| ||| |||||||||||||||||||||  |||||||||||||||| ||| ||||| |||||||| |||||||||    
T  47601524 acacccactttgtctccaactttgaacttttctactttgcttcccacttttgtcactataccaacaatctcatgtctg 47601601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 309
Target Start/End: Original strand, 13238328 - 13238362
Alignment:
Q  275 tagtggatagttcgtagtgccccattcattcttcg 309  Q
    |||||||||||||||||||||||||||||||||||    
T  13238328 tagtggatagttcgtagtgccccattcattcttcg 13238362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 309
Target Start/End: Original strand, 13238548 - 13238582
Alignment:
Q  275 tagtggatagttcgtagtgccccattcattcttcg 309  Q
    |||||||||||||||||||||||||||||| ||||    
T  13238548 tagtggatagttcgtagtgccccattcatttttcg 13238582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 309
Target Start/End: Complemental strand, 22100 - 22066
Alignment:
Q  275 tagtggatagttcgtagtgccccattcattcttcg 309  Q
    |||||||||||||||||||||||||||||||||||    
T  22100 tagtggatagttcgtagtgccccattcattcttcg 22066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 309
Target Start/End: Complemental strand, 22320 - 22286
Alignment:
Q  275 tagtggatagttcgtagtgccccattcattcttcg 309  Q
    |||| ||||||||||||||||||||||||||||||    
T  22320 tagttgatagttcgtagtgccccattcattcttcg 22286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 309
Target Start/End: Complemental strand, 27343933 - 27343899
Alignment:
Q  275 tagtggatagttcgtagtgccccattcattcttcg 309  Q
    |||||||||||||||||||||||||||||||||||    
T  27343933 tagtggatagttcgtagtgccccattcattcttcg 27343899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 309
Target Start/End: Complemental strand, 27344153 - 27344119
Alignment:
Q  275 tagtggatagttcgtagtgccccattcattcttcg 309  Q
    |||||||||||||||||||||||||||||||||||    
T  27344153 tagtggatagttcgtagtgccccattcattcttcg 27344119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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