View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13061_low_36 (Length: 450)
Name: NF13061_low_36
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_36 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 40550766 - 40550326
Alignment:
| Q |
1 |
ctatattgttatctataccctatgtgaatgatcgcagaaacatatacttgtgcagtaattgaatctggttatgatttcttttttgtttgaatttcttaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40550766 |
ctatattgttatctataccctatgtgaatgatcgcagaaacatatacttgtgcagtaattgaatctggttatgatttcttttttgtttgaatttcttaat |
40550667 |
T |
|
| Q |
101 |
atacataaataaaattctatattaaaacacatgatattaacacatttcctttctcttaagcaaaaggaaaccactgtgcatacctattaccttacaggat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40550666 |
atacataaataaaattctatattaaaacacatgatattaacacatttcctttctcttaagcaaaaggaaaccactgtgcatacctattaccttacaggat |
40550567 |
T |
|
| Q |
201 |
aaatacattgcaatactagtaaaacattgtactaatgaaattctataggaaggggagtaccatcccaatccttaaggcattcaaacattggatctattat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40550566 |
aaatacattgcaatactagtaaaacattgtactaatgaaattctataggaaggggagtaccatcccaatccttaaggcattcaaacattggatcaattat |
40550467 |
T |
|
| Q |
301 |
ctttccaagagtaattgcattcaaaactttatcaaaatcttctcctggtgatttaattttctcaccagttaaaaattcagtccccaattcctctctaaca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40550466 |
ctttccaagagtaattgcattcaaaactttatcaaaatcttctcctggtgatttaattttctcaccagttaaaaattcaatccccaattcctctctaaca |
40550367 |
T |
|
| Q |
401 |
aacttatacaatggataagacctgcattccttgatattgtt |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40550366 |
aacttatacaatggataagacctgcattccttgattttgtt |
40550326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 234 - 441
Target Start/End: Complemental strand, 40560222 - 40560013
Alignment:
| Q |
234 |
aatgaaattctataggaaggg--gagtaccatcccaatccttaaggcattcaaacattggatctattatctttccaagagtaattgcattcaaaacttta |
331 |
Q |
| |
|
||||||| |||||||||||| | |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
40560222 |
aatgaaaatctataggaaggtacgtgtaccatctcaatccttaaggcattcaaacattggatcaattatctttccaagagtaattgcattcaaaacttta |
40560123 |
T |
|
| Q |
332 |
tcaaaatcttctcctggtgatttaattttctcaccagttaaaaattcagtccccaattcctctctaacaaacttatacaatggataagacctgcattcct |
431 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
40560122 |
tcaaaatcttctcctggtgatttaactttttcaccagttaaaaattcagtccacaattcctctctaacaaacttatacaacggatacaacctgcattcct |
40560023 |
T |
|
| Q |
432 |
tgatattgtt |
441 |
Q |
| |
|
|||| ||||| |
|
|
| T |
40560022 |
tgattttgtt |
40560013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 383 - 441
Target Start/End: Original strand, 28183755 - 28183813
Alignment:
| Q |
383 |
cccaattcctctctaacaaacttatacaatggataagacctgcattccttgatattgtt |
441 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||| |||||||| || ||||| |
|
|
| T |
28183755 |
cccaactcctctctaacaaacttgtacaatggataagacctacattccttaatcttgtt |
28183813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University