View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13061_low_37 (Length: 442)
Name: NF13061_low_37
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_37 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 19 - 437
Target Start/End: Complemental strand, 44691922 - 44691504
Alignment:
| Q |
19 |
acaatgcacgcagtatcatagagtactgaaagtggcgaatgctagagaaagagataaccatagttaagaaaatatataggaatcaaaataacatagcacc |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44691922 |
acaatgcacggagtatcatagagtactgaaagtggcgaatgctagagaaagagataaccatagttaagaaaatatataggaatcaaaataacatagcacc |
44691823 |
T |
|
| Q |
119 |
aggatgacacctaataaaaattatcctggccatagagaaagtatatccaagtgattgataagcatggaatgacatgaagatttggtttaattgaagtttg |
218 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
44691822 |
aggatgatacctaataaaaattatcctggccaaagagaaagtatatccatgtgattgataagcatggaatggcatgaagatttggtataattgaagtttt |
44691723 |
T |
|
| Q |
219 |
agacagtaacaaacgaacctttgtcttggtctcacatttgatatccaattgttgtagccgaagagagagatgaccggcaattcgttttccaaggaaccat |
318 |
Q |
| |
|
||| |||||||||| | ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44691722 |
agaaagtaacaaaccagcctttgtcttggtctcacatttgatatccaattgttgaacccgaagagagagatgaccggcaattcgttttccaaggaaccat |
44691623 |
T |
|
| Q |
319 |
ggcatgcaatggcatcccggctgaagcaccttttcaaatttcccaaaaccttctttcatagccacttgagattgatcaacttgcacgcaacacacaagat |
418 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
44691622 |
ggcatgcaatggcatcccggatgaagcaccttttcaaatttcccaaaaccttctttcatagccacttgagattgatcaacttgcacgcaacacacaatat |
44691523 |
T |
|
| Q |
419 |
tccccattttcttctcact |
437 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
44691522 |
tccccattttcttttcact |
44691504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 66 - 437
Target Start/End: Complemental strand, 44682193 - 44681830
Alignment:
| Q |
66 |
aaagagataaccatagttaagaaaatatataggaatcaaaataacatagcaccaggatgacacctaataaaaattatcctggccatagagaaagtatatc |
165 |
Q |
| |
|
||||||||||||||| ||||||||| | | || ||||||| |||||||| |||||||||||| |||| || || ||||| |||| | ||||||||| | |
|
|
| T |
44682193 |
aaagagataaccatatttaagaaaacacaaagaaatcaaattaacatagtaccaggatgacaactaaaaacaa--atcctagccaaaaagaaagtattt- |
44682097 |
T |
|
| Q |
166 |
caagtgattgataagcatggaatgacatgaagatttggtttaattgaagtttgagacagtaacaaacgaacctttgtcttggtctcacatttgatatcca |
265 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||| |||||||||| |
|
|
| T |
44682096 |
-atgttattgataagcatggaatgacatgaagatttggtttaattgatgtttgagacagtaacaaac----ctttgtctttgtctcacacttgatatcca |
44682002 |
T |
|
| Q |
266 |
attgttgtagccgaagagagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaatttcccaaa |
365 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44682001 |
attgttgtacccgaagagagagatgaccagcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaattttccaaa |
44681902 |
T |
|
| Q |
366 |
accttctttcatagccacttgagattgatcaacttgcacgcaacacacaagattccccattttcttctcact |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
44681901 |
accttctttcatagccacttgagattgatcaacttgcacacaacacacaagattccccattttcttttcact |
44681830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 66 - 437
Target Start/End: Complemental strand, 44653179 - 44652816
Alignment:
| Q |
66 |
aaagagataaccatagttaagaaaatatataggaatcaaaataacatagcaccaggatgacacctaataaaaattatcctggccatagagaaagtatatc |
165 |
Q |
| |
|
||||||||||||||| ||||||||| | | |||||||||| ||||||||||||||||||||| |||| || || ||||| |||| | ||||||||| | |
|
|
| T |
44653179 |
aaagagataaccatatttaagaaaacacaaaggaatcaaattaacatagcaccaggatgacaactaaaaacaa--atcctagccaaaaagaaagtattt- |
44653083 |
T |
|
| Q |
166 |
caagtgattgataagcatggaatgacatgaagatttggtttaattgaagtttgagacagtaacaaacgaacctttgtcttggtctcacatttgatatcca |
265 |
Q |
| |
|
| || |||| |||||||||||||||||||| | ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44653082 |
-atgttattggtaagcatggaatgacatgaacacttggtttaattgatgtttgagaccgtaac----gaacctttgtcttggtctcacatttgatatcca |
44652988 |
T |
|
| Q |
266 |
attgttgtagccgaagagagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaatttcccaaa |
365 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44652987 |
attgttgtacccgaagagagagatgaccagcaattctttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaattttccaaa |
44652888 |
T |
|
| Q |
366 |
accttctttcatagccacttgagattgatcaacttgcacgcaacacacaagattccccattttcttctcact |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
44652887 |
accttctttcatagccacttgagattgatcaacttgcacacaacacacaagattccccattttcttttcact |
44652816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 65 - 427
Target Start/End: Complemental strand, 44631713 - 44631338
Alignment:
| Q |
65 |
gaaagagataaccatagttaagaaaatatataggaatcaaaataacatagcaccaggatgacacctaataaaaatta--------tcctggccatagaga |
156 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | |||| |||| || || |
|
|
| T |
44631713 |
gaaagagataaccatagttaagaaaacatatagaaatcaaaataacatagcaccaggatgacacctaataaaaatgaaaataaaatcctagccagagcga |
44631614 |
T |
|
| Q |
157 |
aagtatatccaagtgattga--------taagcat--ggaatgacatgaagatttggtttaattgaagtttgagacagtaacaaacgaacctttgtcttg |
246 |
Q |
| |
|
|||||||| | || ||||| || |||| |||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
44631613 |
aagtatat--atgttattgacttattggtatgcataaggaatgacatgaagatttggttgaattaaagtttgagacagtaacaaa---acctttgtcttg |
44631519 |
T |
|
| Q |
247 |
gtctcacatttgatatccaattgttgtagccgaagagagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagca |
346 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44631518 |
gtctcacattttatatccaattgttgtagccgaagggagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcctggctgaagca |
44631419 |
T |
|
| Q |
347 |
ccttttcaaatttcccaaaaccttctttcatagccacttgagattgatcaacttgcacgcaacacacaagattccccattt |
427 |
Q |
| |
|
||| ||||||||| |||||||||||| |||||||||| ||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44631418 |
cctcttcaaattttccaaaaccttctctcatagccaccgtagactgatcaacttgcacgcaacacaaaagattccccattt |
44631338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 174 - 431
Target Start/End: Original strand, 44637251 - 44637508
Alignment:
| Q |
174 |
tgataagcatggaatgacatgaagatttggtttaattgaagtttgagacagtaacaaacgaacctttgtcttggtctcacatttgatatccaattgttgt |
273 |
Q |
| |
|
|||||| ||||||||||| ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
44637251 |
tgataatcatggaatgacgtgaagatttcgttaaattgaagttttagacagtaacaaacgaacctttgtcttggtctcacattttatatccaattgctgt |
44637350 |
T |
|
| Q |
274 |
agccgaagagagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaatttcccaaaaccttctt |
373 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| |||| |
|
|
| T |
44637351 |
agccgaagagagagatgaccagcaattcgttttccaaggaaccatggcatgcaatggcatcctggctgaagcacctcttcaaattttccaaaaccctctt |
44637450 |
T |
|
| Q |
374 |
tcatagccacttgagattgatcaacttgcacgcaacacacaagattccccattttctt |
431 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
44637451 |
tcatagccactgtagattgatcaacttgcacacaacacaaaagattccccattttctt |
44637508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University