View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13061_low_38 (Length: 416)
Name: NF13061_low_38
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_38 |
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| [»] scaffold0883 (1 HSPs) |
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| [»] scaffold0095 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Complemental strand, 38817472 - 38817093
Alignment:
| Q |
18 |
attacaacggaaggaaaagccgagatttaccgcagcgattttagtgatttttctgctgcttttgcaatagctgccgctgcatctgcttctgcttctgcag |
117 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38817472 |
attacaacggaaggaaaagccgagatttaccgcag---------tgatttttctgctgcttttgcaatagctgccgctgcatctgcttctgcttctgcag |
38817382 |
T |
|
| Q |
118 |
cctctgcctcctttgttgcctcttcagcttctgccatggcggcttctgcttcagcaactgcttgagcagcacatgtgattacctcttgtaaagacatgga |
217 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38817381 |
cctccgcctcctttgttgcctcttcagcttctgccatggcggcttctgcttcagcaactgcttgagcagcacatgcgattacctcttgtaaagacatgga |
38817282 |
T |
|
| Q |
218 |
ctttaacttttccaattccaagtctatctcagcctttcttttttgataatctatgtcagactttgtagggatattgcccccaccactgtcagatttaata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
38817281 |
ctttaacttttccaattccaagtctatctcagcctttcttttttgataatctatgtcagactttgtagggatattgcccccatccctgtcagatttaata |
38817182 |
T |
|
| Q |
318 |
gaggctttctgcctcccttccaataataacatgggtgggtatcctcctctatctgaatatgcttgggtaggcgcaatcatgtacctatg |
406 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38817181 |
gaggctttctgcctcccttccaataataacatgggtgggtatcctcctctatctgaatatgcttgggtaggcgcaatcatgtacctatg |
38817093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 75 - 254
Target Start/End: Complemental strand, 39458091 - 39457912
Alignment:
| Q |
75 |
gcttttgcaatagctgccgctgcatctgcttctgcttctgcagcctctgcctcctttgttgcctcttcagcttctgccatggcggcttctgcttcagcaa |
174 |
Q |
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|
|||| ||||| |||| | |||||| |||| || ||||||||||||||||||||||| | ||||||||||||||| || |||||||||||||| ||||| | |
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| T |
39458091 |
gcttctgcaaaagcttctgctgcagctgcatccgcttctgcagcctctgcctccttagctgcctcttcagcttccgctatggcggcttctgcatcagcga |
39457992 |
T |
|
| Q |
175 |
ctgcttgagcagcacatgtgattacctcttgtaaagacatggactttaacttttccaattccaagtctatctcagccttt |
254 |
Q |
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||||| |||||||| ||| | ||||||| |||||||||| ||| |||||| | ||| || |||||||||| |||| |
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| T |
39457991 |
ctgctcgagcagcatatgcggcagcctcttgagcagacatggaccttaccttttctatttctaaatctatctcagacttt |
39457912 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 264 - 395
Target Start/End: Complemental strand, 39465301 - 39465169
Alignment:
| Q |
264 |
taatctatgtcagactttgtagggatattgcccccaccactgtcagatttaata-gaggctttctgcctcccttccaataataacatgggtgggtatcct |
362 |
Q |
| |
|
||||||| ||||| || ||||||||||||| | || | |||||| |||| ||| ||||||||| ||| |||||||||||||||||||||| ||| || | |
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| T |
39465301 |
taatctaactcagaattcgtagggatattgctctcagccctgtcaaatttcatatgaggctttccgccccccttccaataataacatgggttggtgtctt |
39465202 |
T |
|
| Q |
363 |
cctctatctgaatatgcttgggtaggcgcaatc |
395 |
Q |
| |
|
||||| |||||||||||| ||||||| |||||| |
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| T |
39465201 |
cctctgtctgaatatgctggggtaggtgcaatc |
39465169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 355
Target Start/End: Complemental strand, 39457883 - 39457838
Alignment:
| Q |
310 |
atttaatagaggctttctgcctcccttccaataataacatgggtgg |
355 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39457883 |
atttcatagaggttttctgcctcccttccaataataacatgggtgg |
39457838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 142
Target Start/End: Original strand, 15996391 - 15996438
Alignment:
| Q |
95 |
tgcatctgcttctgcttctgcagcctctgcctcctttgttgcctcttc |
142 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||| | |||||||||| |
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|
| T |
15996391 |
tgcatctgcatctgcttctgcagcctcagcctcctctattgcctcttc |
15996438 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 39465381 - 39465325
Alignment:
| Q |
123 |
gcctcctttgttgcctcttcagcttctgccatggcggcttctgcttcagcaactgct |
179 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||| |||||| ||||||| |
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|
| T |
39465381 |
gcctcctttgttgcctcttcagcttccgtagtggcggcttccacttcagtaactgct |
39465325 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 95 - 249
Target Start/End: Complemental strand, 12082745 - 12082591
Alignment:
| Q |
95 |
tgcatctgcttctgcttctgcagcctctgcctcctttgttgcctcttcagcttctgccatggcggcttctgcttcagcaactgcttgagcagcacatgtg |
194 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||| || |||||| |||||| ||||||||||||||| |||||||| ||| | |
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| T |
12082745 |
tgcatctgcctccgcttctgcagcctctgcctcctttgttgcctcttcagcctccgccatgagggcttccgcttcagcaactgctcgagcagcatatgcg |
12082646 |
T |
|
| Q |
195 |
attacctcttgtaaagacatggactttaacttttccaattccaagtctatctcag |
249 |
Q |
| |
|
| |||||||| |||||||||| ||| ||||| ||||| || || ||||||| |
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|
| T |
12082645 |
gctgcctcttgtgcagacatggaccttattttttctaattctaaatcgatctcag |
12082591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 273 - 395
Target Start/End: Complemental strand, 12082594 - 12082472
Alignment:
| Q |
273 |
tcagactttgtagggatattgcccccaccactgtcagatttaatagaggctttctgcctcccttccaataataacatgggtgggtatcctcctctatctg |
372 |
Q |
| |
|
|||||||| ||||||||||||| | || | |||| | |||| |||||| |||| ||||||||||||||||| || | | ||||| || |||||| |||| |
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| T |
12082594 |
tcagacttagtagggatattgctctcatccctgtaaaatttcatagagcctttttgcctcccttccaataacaatgttgatgggtgtcttcctctgtctg |
12082495 |
T |
|
| Q |
373 |
aatatgcttgggtaggcgcaatc |
395 |
Q |
| |
|
|||||||| | ||||| |||||| |
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|
| T |
12082494 |
aatatgctggagtaggtgcaatc |
12082472 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0883 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0883
Description:
Target: scaffold0883; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 75 - 188
Target Start/End: Original strand, 4609 - 4722
Alignment:
| Q |
75 |
gcttttgcaatagctgccgctgcatctgcttctgcttctgcagcctctgcctcctttgttgcctcttcagcttctgccatggcggcttctgcttcagcaa |
174 |
Q |
| |
|
|||| ||||| |||| | |||||| |||| || ||||||||||||||||||||||| | ||||||||||||||| || |||||||||||||| ||||| | |
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|
| T |
4609 |
gcttctgcaaaagcttctgctgcagctgcatccgcttctgcagcctctgcctccttagctgcctcttcagcttccgctatggcggcttctgcatcagcga |
4708 |
T |
|
| Q |
175 |
ctgcttgagcagca |
188 |
Q |
| |
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||||| |||||||| |
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| T |
4709 |
ctgctcgagcagca |
4722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 75 - 188
Target Start/End: Original strand, 48402 - 48515
Alignment:
| Q |
75 |
gcttttgcaatagctgccgctgcatctgcttctgcttctgcagcctctgcctcctttgttgcctcttcagcttctgccatggcggcttctgcttcagcaa |
174 |
Q |
| |
|
|||| ||||| |||| | |||||| |||| || ||||||||||||||||||||||| | ||||||||||||||| || |||||||||||||| ||||| | |
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|
| T |
48402 |
gcttctgcaaaagcttctgctgcagctgcatccgcttctgcagcctctgcctccttagctgcctcttcagcttccgctatggcggcttctgcatcagcga |
48501 |
T |
|
| Q |
175 |
ctgcttgagcagca |
188 |
Q |
| |
|
||||| |||||||| |
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|
| T |
48502 |
ctgctcgagcagca |
48515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 264 - 395
Target Start/End: Original strand, 23200 - 23332
Alignment:
| Q |
264 |
taatctatgtcagactttgtagggatattgcccccaccactgtcagatttaata-gaggctttctgcctcccttccaataataacatgggtgggtatcct |
362 |
Q |
| |
|
||||||| ||||| || ||||||||||||| | || | |||||| |||| ||| ||||||||| ||| |||||||||||||||||||||| ||| || | |
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|
| T |
23200 |
taatctaactcagaattcgtagggatattgctctcagccctgtcaaatttcatatgaggctttccgccccccttccaataataacatgggttggtgtctt |
23299 |
T |
|
| Q |
363 |
cctctatctgaatatgcttgggtaggcgcaatc |
395 |
Q |
| |
|
||||| |||||||||||| ||||||| |||||| |
|
|
| T |
23300 |
cctctgtctgaatatgctggggtaggtgcaatc |
23332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 23120 - 23176
Alignment:
| Q |
123 |
gcctcctttgttgcctcttcagcttctgccatggcggcttctgcttcagcaactgct |
179 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||| |||||| ||||||| |
|
|
| T |
23120 |
gcctcctttgttgcctcttcagcttccgtagtggcggcttccacttcagtaactgct |
23176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 193
Target Start/End: Complemental strand, 20150201 - 20150104
Alignment:
| Q |
96 |
gcatctgcttctgcttctgcagcctctgcctcctttgttgcctcttcagcttctgccatggcggcttctgcttcagcaactgcttgagcagcacatgt |
193 |
Q |
| |
|
|||||||| || |||||||||| | | ||||||||||||||||||||||||| || ||||||||||| |||| |||||| ||| ||||||| |||| |
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|
| T |
20150201 |
gcatctgcatccgcttctgcagtcagtacctcctttgttgcctcttcagcttccgcaatggcggcttccgctttagcaacagctccagcagcatatgt |
20150104 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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