View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_40 (Length: 402)
Name: NF13061_low_40
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 20 - 386
Target Start/End: Complemental strand, 9640745 - 9640381
Alignment:
| Q |
20 |
ctgcaccgctttttcgaagggattgtctgtatatgttctttattgatttgaattattactactttgtatgcagagtacaaggatacaaagtatagtgaca |
119 |
Q |
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| T |
9640745 |
ctgcaccgctttt-cgaaggtattgtctgtatatgttctttattgatttgaatttttactactttgtatgcagagtacaaggatacaaagtatagtcaca |
9640647 |
T |
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| Q |
120 |
tcagtgaatatatgtgttttgatgtttatcatcgtagctggtggttatttgggattcaaaactggatggattggatataaactccctacagggtaatttt |
219 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9640646 |
tcagtgaatatatgtgctttgatgtttatcatcgtagctggtggttatttgggattcaaaactggatggattggatataaactccctacagggtaa-ttt |
9640548 |
T |
|
| Q |
220 |
acatctttcttctacactacccttaatccgtttatgtttggtctcttaatatttgtatcttgttttaataataggtattttgcatttggagtagatggaa |
319 |
Q |
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| T |
9640547 |
acatctttcttctacactacccttaatccgtttatgtttggtctcttaatatttgtatcttgttttaataataggtattttgcatttggagtagatggaa |
9640448 |
T |
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| Q |
320 |
tggttgctggttctgcaacagcnnnnnnngcatacattggttttgatgctgttgccagcgctgctga |
386 |
Q |
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| T |
9640447 |
tggttgctggttctgcaacagctttttttgcatacataggttttgatgcagttgccagcgctgctga |
9640381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 83 - 341
Target Start/End: Complemental strand, 9630836 - 9630561
Alignment:
| Q |
83 |
ttgtatgcagagtacaaggatacaaagtatagtgacatcagtgaatatatgtgttttgatgtttatcatcgtagctggtggttatttgggattcaaaact |
182 |
Q |
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| T |
9630836 |
ttgtatgcagagtgcaatgatacaaagtatagtcacatcaatgaatatatgtgctttgatgtttgtcatagtagctggtggttatttgggattcaaaact |
9630737 |
T |
|
| Q |
183 |
ggatggattggatataaactccctacagggta-----attttacatctttcttctacactacccttaatccgtttatgtttggtctct------------ |
265 |
Q |
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| T |
9630736 |
ggatggattggatatgaactccctaaagggtaagcgtaatctacatctttcttcaacac-atccctactacatctatttttcgtctcttcaagttattga |
9630638 |
T |
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| Q |
266 |
-taatatttgtatcttgttttaataataggtattttgcatttggagtagatggaatggttgctggttctgcaacagc |
341 |
Q |
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| T |
9630637 |
ataatatttgtatcttgttttaattataggtattttccatttgggatagatggaatggttgctagttctgcaacagc |
9630561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 88 - 227
Target Start/End: Complemental strand, 9656968 - 9656828
Alignment:
| Q |
88 |
tgcagagtacaaggatacaaagtatagtgacatcagtgaatatatgtgttttgatgtttatcatcgtagctggtggttatttgggattcaaaactggatg |
187 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| |||| ||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
9656968 |
tgcagagtacaatgatacaaagtatagtgacatcagtgaatatctgtgctttaatgtttatcatagtagctggtggttatttaggattcaaaactggatg |
9656869 |
T |
|
| Q |
188 |
gattggatataaactccctacagggtaa-ttttacatcttt |
227 |
Q |
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| T |
9656868 |
gattggatataaactcccaacagggtaacttttacatcttt |
9656828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 83 - 215
Target Start/End: Complemental strand, 9616289 - 9616157
Alignment:
| Q |
83 |
ttgtatgcagagtacaaggatacaaagtatagtgacatcagtgaatatatgtgttttgatgtttatcatcgtagctggtggttatttgggattcaaaact |
182 |
Q |
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||||||||||||| ||| |||||| ||||||||||||||| |||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
9616289 |
ttgtatgcagagtgcaatgatacagagtatagtgacatcaatgaatatatgtgctttgatgtttgtcatagtagctggtggttatttgggattcaaaact |
9616190 |
T |
|
| Q |
183 |
ggatggattggatataaactccctacagggtaa |
215 |
Q |
| |
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||||||||||||||| |||| |||| ||||||| |
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| T |
9616189 |
ggatggattggatatgaacttcctaaagggtaa |
9616157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 266 - 383
Target Start/End: Complemental strand, 9656790 - 9656673
Alignment:
| Q |
266 |
taatatttgtatcttgttttaataataggtattttgcatttggagtagatggaatggttgctggttctgcaacagcnnnnnnngcatacattggttttga |
365 |
Q |
| |
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|||||||| | |||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9656790 |
taatatttatctcttgttttaataataggtattttccttttggggtagatggaatggttgctggttctgcaacagctttttttgcatacattggttttga |
9656691 |
T |
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| Q |
366 |
tgctgttgccagcgctgc |
383 |
Q |
| |
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||||||||||||| |||| |
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| T |
9656690 |
tgctgttgccagcactgc |
9656673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 383
Target Start/End: Complemental strand, 9616089 - 9615972
Alignment:
| Q |
266 |
taatatttgtatcttgttttaataataggtattttgcatttggagtagatggaatggttgctggttctgcaacagcnnnnnnngcatacattggttttga |
365 |
Q |
| |
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|||||||| | || ||||||||| ||||||||||| ||||||| ||| |||||||||||||| ||||||||||||| |||||||| |||||||| |
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| T |
9616089 |
taatatttatctcctgttttaattataggtattttccatttggggtaaatggaatggttgctagttctgcaacagccttttttgcatacataggttttga |
9615990 |
T |
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| Q |
366 |
tgctgttgccagcgctgc |
383 |
Q |
| |
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|| |||||||| |||| |
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| T |
9615989 |
agcaattgccagcactgc |
9615972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 214
Target Start/End: Original strand, 33643059 - 33643162
Alignment:
| Q |
111 |
atagtgacatcagtgaatatatgtgttttgatgtttatcatcgtagctggtggttatttgggattcaaaactggatggattggatataaactccctacag |
210 |
Q |
| |
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|||||||||||||||||| |||||| ||| | ||| | || |||||||||||||| |||||||||| |||||||| |||||||| |||| ||||| | |
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| T |
33643059 |
atagtgacatcagtgaatgtatgtgcattgctttttgtgatagtagctggtggttacatgggattcaagtctggatgggttggatatgaacttcctaccg |
33643158 |
T |
|
| Q |
211 |
ggta |
214 |
Q |
| |
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|||| |
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|
| T |
33643159 |
ggta |
33643162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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