View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_42 (Length: 384)
Name: NF13061_low_42
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 2 - 376
Target Start/End: Original strand, 26003285 - 26003665
Alignment:
| Q |
2 |
agtttattcttaacttagtaactgattaagtttctcttttcaatcttgttcaggttagtaatcaagaagcagtagatatagcacatccttattgtgcagg |
101 |
Q |
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| T |
26003285 |
agtttagtcttaacttagtaactgattaagtttctcttttcaatcttgttcaggttagtaatcaagaagcagtagatatagcacatccttattgtgcagg |
26003384 |
T |
|
| Q |
102 |
gagcaatagacaaggatccttccaagcttgtaagaaacttgtagatttatctgtatcgcgaggctctttcgatgatataagtgttatgatcatcaaacta |
201 |
Q |
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| T |
26003385 |
gagcaatagacaaggatccttcccagcttgtaagaaacttgtagatttatctgtatcgcgaggctctatcgacgatataagtgttatgatcatcaaacta |
26003484 |
T |
|
| Q |
202 |
caaaactacatttgaagtttcattaaaacaaacacagacaactaacacgacaccagttataatttagtaaaatgaatgtaattacatgttcagtgcccga |
301 |
Q |
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| T |
26003485 |
cagaactacgtttgaagtttcattaatacaaacacagacgactaacacgacaccag-tataatttagtaaaatgaatgtaattacatgttcagtgcccga |
26003583 |
T |
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| Q |
302 |
tatcaatgtatgttggacaccagagacgtcttcaatctgaactgtagatgcta-------taggatgataggatgccttcat |
376 |
Q |
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| T |
26003584 |
tatcaatgtatgttggacaccagagacgtcttcaatctgaagtgtagatgctacataaattaggatgataggatgccttcat |
26003665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 26018037 - 26018238
Alignment:
| Q |
18 |
agtaactgattaagtttctcttttcaatcttgttcaggttagtaatcaagaagcagtagatatagcacatccttattgtgcagggagcaatagacaagga |
117 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| | || ||||| |||| || |||||||||||||||| |
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| T |
26018037 |
agtaactgatttagtttctcttttcaatcttgttcaggttagtaatcaagaagctgtagatcttgctggtcctttatgtgtagagagcaatagacaagga |
26018136 |
T |
|
| Q |
118 |
tccttccaagcttgtaagaaacttgtagatttatctgtatcgcgaggctctttcgatgatataagtgttatgatcatcaaactacaaaactacatttgaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
26018137 |
tccttccaagcttgtaagaaacttgtagatttatctgtatcgcgaggctctatcgatgatataagtgttatgataatcaaattacaaaactacatttgaa |
26018236 |
T |
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| Q |
218 |
gt |
219 |
Q |
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|| |
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| T |
26018237 |
gt |
26018238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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