View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13061_low_43 (Length: 384)

Name: NF13061_low_43
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13061_low_43
NF13061_low_43
[»] chr7 (5 HSPs)
chr7 (78-384)||(6698-7003)
chr7 (11-82)||(8190-8261)
chr7 (94-223)||(47799254-47799383)
chr7 (123-190)||(48955189-48955256)
chr7 (96-190)||(27132173-27132268)
[»] chr1 (4 HSPs)
chr1 (11-224)||(42645329-42645546)
chr1 (101-185)||(14285832-14285916)
chr1 (97-190)||(30466876-30466969)
chr1 (94-162)||(1013389-1013458)
[»] chr8 (3 HSPs)
chr8 (11-148)||(33688782-33688923)
chr8 (98-161)||(42112454-42112517)
chr8 (94-158)||(28091441-28091506)
[»] chr5 (2 HSPs)
chr5 (123-190)||(5766811-5766878)
chr5 (127-180)||(43588336-43588389)
[»] chr3 (4 HSPs)
chr3 (123-190)||(20313378-20313445)
chr3 (94-224)||(49144731-49144861)
chr3 (94-162)||(42144431-42144500)
chr3 (94-158)||(49756341-49756406)
[»] chr4 (2 HSPs)
chr4 (94-180)||(1013368-1013454)
chr4 (126-162)||(17512157-17512193)
[»] chr6 (1 HSPs)
chr6 (109-190)||(21983238-21983319)
[»] chr2 (1 HSPs)
chr2 (127-180)||(2501801-2501854)


Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 78 - 384
Target Start/End: Complemental strand, 7003 - 6698
Alignment:
Q  78 gcggatgattaatttgattccagatctagaagatgaatagagtacaggtagactatgataagatcaatacacctctttaatctaacggtgaaaatccaac 177  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7003 gcggaagattaatttgattctagatctagaagatgaatagagtacaggtagactatgataagatcaatacacctctttaatctaatggtgaaaatccaac 6904  T
Q  178 ttttccatgatggnnnnnnncctcacttaccccggctaaatgccaccgctagaccatcagacttgaaataaaacctctaaaatgtaataagttagactta 277  Q
    ||| ||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6903 tttcccatgatgaaaaaaaacctcacttaccccggctaaatgccaccgctagaccatcagacttgaaataaaacctctaaaatgtaataagttagactta 6804  T
Q  278 atttccctcnnnnnnnnngttagacttatttaatttttgaactatacctaatttatttaagcaaagttcataacagcctaacatggtctattttctatcc 377  Q
    |||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6803 atttccctc-aaaaaaaagttagacttatttaatttttgaactatacctaatttatttaagcaaagttcataacagcctaacatggtctattttctatcc 6705  T
Q  378 ttagtgg 384  Q
    |||||||    
T  6704 ttagtgg 6698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 8261 - 8190
Alignment:
Q  11 cagagaggatggaagcaaatgcttttgtctggtggtgatgggtgagtggaggagacatggaaagagagcgga 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8261 cagagaggatggaagcaaatgcttttgtctggtggtgatgggtgagtggaggagacatggaaagagagcgga 8190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 94 - 223
Target Start/End: Complemental strand, 47799383 - 47799254
Alignment:
Q  94 attccagatctagaagatgaatagagtacaggtagactatgataagatcaatacacctctttaatctaacggtgaaaatccaacttttccatgatggnnn 193  Q
    |||| ||||||| | |||||||| ||| ||||||||| ||||||||||||||||||||||||||||||| ||| |||||| |||||| |||||||||       
T  47799383 attctagatctaaaggatgaataaagtgcaggtagaccatgataagatcaatacacctctttaatctaatggtaaaaatcaaactttcccatgatgggaa 47799284  T
Q  194 nnnncctcacttaccccggctaaatgccac 223  Q
        | |||||||||| |||||||||||||    
T  47799283 aaaacttcacttacccaggctaaatgccac 47799254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 48955189 - 48955256
Alignment:
Q  123 aggtagactatgataagatcaatacacctctttaatctaacggtgaaaatccaacttttccatgatgg 190  Q
    |||||||| || |||||||||||||||||||||||||| | ||| |||||| |||||| |||||||||    
T  48955189 aggtagaccattataagatcaatacacctctttaatctgatggtaaaaatcaaactttcccatgatgg 48955256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 190
Target Start/End: Original strand, 27132173 - 27132268
Alignment:
Q  96 tccagatctagaagatgaatagagtacaggtagactatgataagatcaatacacctctttaatctaacggt-gaaaatccaacttttccatgatgg 190  Q
    |||||| ||||| |||||||| | ||||| ||||| ||||||||| || |||||| ||||||||||| |||  ||||| ||||||| |||||||||    
T  27132173 tccagagctagatgatgaataaaatacagatagaccatgataagaccagtacaccactttaatctaatggtaaaaaattcaactttcccatgatgg 27132268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 42645546 - 42645329
Alignment:
Q  11 cagagaggatggaagcaaatgcttttgtctggtggtgatgggtgagtggaggagacatggaaagagagcggatg----attaatttgattccagatctag 106  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |    |||| |||| ||||||||||||    
T  42645546 cagagaggatggaagcaaatgcttttgtatggtggtgatgggtgagtggaggagacatggaaagagagcggacggaagattattttgcttccagatctag 42645447  T
Q  107 aagatgaatagagtacaggtagactatgataagatcaatacacctctttaatctaacggtgaaaatccaacttttccatgatggnnnnnnncctcactta 206  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||        |||||||||    
T  42645446 aagatgaatagagtacaggtaaactatgataagatcaatacacctctttaatctaatggtgaaaatccaactttcccacgatgagaaaaaacctcactta 42645347  T
Q  207 ccccggctaaatgccacc 224  Q
    ||| ||||||||||||||    
T  42645346 cccaggctaaatgccacc 42645329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 185
Target Start/End: Original strand, 14285832 - 14285916
Alignment:
Q  101 atctagaagatgaatagagtacaggtagactatgataagatcaatacacctctttaatctaacggtgaaaatccaacttttccat 185  Q
    ||||||| ||||| || |||| |||||||| |||||||| ||||||||||| |||||||||| ||| ||||||  ||||||||||    
T  14285832 atctagaggatgattaaagtataggtagaccatgataagttcaatacacctgtttaatctaatggtaaaaatctgacttttccat 14285916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 190
Target Start/End: Original strand, 30466876 - 30466969
Alignment:
Q  97 ccagatctagaagatgaatagagtacaggtagactatgataagatcaatacacctctttaatctaacggtgaaaatccaacttttccatgatgg 190  Q
    ||||| ||||| |||||||| | ||||||||||  ||||||||| || |||||  ||||||||||| ||| ||||| ||||||| |||||||||    
T  30466876 ccagagctagaggatgaataaaatacaggtagatcatgataagaccagtacactactttaatctaatggtaaaaattcaactttcccatgatgg 30466969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 1013389 - 1013458
Alignment:
Q  94 attccagatct-agaagatgaatagagtacaggtagactatgataagatcaatacacctctttaatctaa 162  Q
    ||||||||||| ||| |||||||| ||||  ||| ||| ||||||||||||||| ||||| |||||||||    
T  1013389 attccagatcttagaggatgaataaagtatgggtggaccatgataagatcaatagacctcattaatctaa 1013458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 11 - 148
Target Start/End: Original strand, 33688782 - 33688923
Alignment:
Q  11 cagagaggatggaagcaaatgcttttgtctggtggtgatgggtgagtggaggagacatggaaagagag----cggatgattaatttgattccagatctag 106  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    |||| ||||| |||||||||||||||||    
T  33688782 cagagaggatggaagcaaatgcttttgtgtggtggtgatgggtgagtggaggagacatggaaagagggtgggcggaagattattttgattccagatctag 33688881  T
Q  107 aagatgaatagagtacaggtagactatgataagatcaataca 148  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33688882 aagatgaatagagtacaggtagactatgataagatcaataca 33688923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 42112454 - 42112517
Alignment:
Q  98 cagatctagaagatgaatagagtacaggtagactatgataagatcaatacacctctttaatcta 161  Q
    |||||||||| |||||||| |||| |||||||| ||| ||||||||||||||||||||||||||    
T  42112454 cagatctagatgatgaataaagtataggtagaccatggtaagatcaatacacctctttaatcta 42112517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 28091506 - 28091441
Alignment:
Q  94 attccagatct-agaagatgaatagagtacaggtagactatgataagatcaatacacctctttaat 158  Q
    ||||||||||| ||| |||||||| ||||  ||| ||| ||||||||||||||||||||| |||||    
T  28091506 attccagatcttagaggatgaataaagtatgggtggaccatgataagatcaatacacctcattaat 28091441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 5766811 - 5766878
Alignment:
Q  123 aggtagactatgataagatcaatacacctctttaatctaacggtgaaaatccaacttttccatgatgg 190  Q
    |||||||| || |||||||||||||||||||||||||| | ||| ||||||||||||| |||||||||    
T  5766811 aggtagaccattataagatcaatacacctctttaatctgatggtaaaaatccaactttcccatgatgg 5766878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 43588389 - 43588336
Alignment:
Q  127 agactatgataagatcaatacacctctttaatctaacggtgaaaatccaacttt 180  Q
    |||| ||||||||||||||| ||||||||||||||| ||| |||||| ||||||    
T  43588389 agaccatgataagatcaatagacctctttaatctaatggtaaaaatctaacttt 43588336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 20313378 - 20313445
Alignment:
Q  123 aggtagactatgataagatcaatacacctctttaatctaacggtgaaaatccaacttttccatgatgg 190  Q
    |||||||| || |||||||||||||||||||||||||||| ||| ||||||||| ||| |||||||||    
T  20313378 aggtagaccattataagatcaatacacctctttaatctaatggtaaaaatccaattttcccatgatgg 20313445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 224
Target Start/End: Complemental strand, 49144861 - 49144731
Alignment:
Q  94 attccagatctagaagatgaatagagtacaggtagactatgataagatcaatacacctctttaatctaacggtgaaaatccaacttttccatgatggnnn 193  Q
    |||| ||||||||| ||||||||  ||  || ||||| |||||| |||||||||||||||||||||||| | | ||||| ||||||||| ||| |||       
T  49144861 attctagatctagaggatgaataatgtgtagatagaccatgatatgatcaatacacctctttaatctaatgataaaaattcaacttttctatgttgggaa 49144762  T
Q  194 nnnncctcacttaccccggctaaatgccacc 224  Q
        | |||||||||  ||||||||||||||    
T  49144761 aaaacttcacttacctaggctaaatgccacc 49144731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 42144500 - 42144431
Alignment:
Q  94 attccagatct-agaagatgaatagagtacaggtagactatgataagatcaatacacctctttaatctaa 162  Q
    ||||||||||| ||| |||||||| ||||  ||| ||| ||||||||||||||||||||| |||||||||    
T  42144500 attccagatcttagaggatgaataaagtatgggtggaccatgataagatcaatacacctcattaatctaa 42144431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 49756406 - 49756341
Alignment:
Q  94 attccagatct-agaagatgaatagagtacaggtagactatgataagatcaatacacctctttaat 158  Q
    ||||||||||| ||| |||||||| ||||  ||| ||| ||||||||||||||||||||| |||||    
T  49756406 attccagatcttagaggatgaataaagtatgggtggaccatgataagatcaatacacctcattaat 49756341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 1013454 - 1013368
Alignment:
Q  94 attccagatctagaagatgaatagagtacaggtagactatgataagatcaatacacctctttaatctaacggtgaaaatccaacttt 180  Q
    |||||||||||||| ||||||||  ||| ||  |||| ||| ||||||||||||| ||||||||||||| ||| |||||||||||||    
T  1013454 attccagatctagaggatgaataatgtatagaaagaccatggtaagatcaatacagctctttaatctaatggtaaaaatccaacttt 1013368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 17512157 - 17512193
Alignment:
Q  126 tagactatgataagatcaatacacctctttaatctaa 162  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  17512157 tagaccatgataaaatcaatacacctctttaatctaa 17512193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 21983238 - 21983319
Alignment:
Q  109 gatgaatagagtacaggtagactatgataagatcaatacacctctttaatctaacggtgaaaatccaacttttccatgatgg 190  Q
    |||||||| | || |||||||| ||||||||||||||||||||||||||||||| |||  |||| ||| ||| |||||||||    
T  21983238 gatgaataaaatataggtagaccatgataagatcaatacacctctttaatctaatggtagaaattcaaatttcccatgatgg 21983319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 2501854 - 2501801
Alignment:
Q  127 agactatgataagatcaatacacctctttaatctaacggtgaaaatccaacttt 180  Q
    |||| |||||||||||||||||||| ||||||| || ||| ||||| |||||||    
T  2501854 agaccatgataagatcaatacacctttttaatcaaatggtaaaaattcaacttt 2501801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University