View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_45 (Length: 380)
Name: NF13061_low_45
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 62 - 362
Target Start/End: Original strand, 31761667 - 31761960
Alignment:
| Q |
62 |
aatatagaaggatctgtattttagtatgttacaaaattatcgctttttaattattgttgtatttttccttcaaaaaattattgttgtatttttacatcta |
161 |
Q |
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| T |
31761667 |
aataaagaaggatctatattttagcatgttacaaaattatcgctttttaattattgttgtatttttccttcaaaaaattattgttgtatttttacatcta |
31761766 |
T |
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| Q |
162 |
attctatagagatctagtatacaaaaaagtttaagtctcttgcatgagtacaacatgaacccaactacttttcttgcaaacttgcaccattgatacctaa |
261 |
Q |
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| T |
31761767 |
attctatagaga----gtatacaaaaaagtttaagtctcttgcatgagtacaacatgaacccaactacttttcttgcaaacttgcaccattgatacctaa |
31761862 |
T |
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| Q |
262 |
ttgtttgacatgattattagatataaaaacatcaatagaagagtaaaatatccactattcatcatattagatattgccttgttcaaatatatagttatac |
361 |
Q |
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| T |
31761863 |
ttgtttgacatgattattagatataaaaacatcaatagaagagtaaaatatccactat---tcatattagatattgccttgctcaaatatatagttatac |
31761959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 31761595 - 31761654
Alignment:
| Q |
11 |
gtgagatgaatatgatgcacgtataatttaactcataataagtttgaaattaatatagaa |
70 |
Q |
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| T |
31761595 |
gtgacatgaatatgatgcacttataatttaactcataataagtttgaaattaatatagaa |
31761654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 31754154 - 31754213
Alignment:
| Q |
11 |
gtgagatgaatatgatgcacgtataatttaactcataataagtttgaaattaatatagaa |
70 |
Q |
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| T |
31754154 |
gtgacatgaatatgattcaactataattgaactcaaaataagtttgaaattaatatagaa |
31754213 |
T |
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