View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_47 (Length: 376)
Name: NF13061_low_47
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 326
Target Start/End: Original strand, 4871178 - 4871480
Alignment:
| Q |
20 |
accacctaaacaacccttaatatatacaatagaatcacagcagaaaaaccttaaccaaatcaagaaaaaacacccagactttcccctaacacaaaatcaa |
119 |
Q |
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|||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||| |
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| T |
4871178 |
accacccaaacaacccttaata----caatataatcacagcagaaaaaccttaaccaaatcaagcaaacacacccagaccttcccctaacacaaaatcaa |
4871273 |
T |
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| Q |
120 |
accagttgccatcaacaccacatcaatagaccccctaaataattgaaccaaaaccagccacctaaacttcctggtacaagtaaattacaattacttagta |
219 |
Q |
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| T |
4871274 |
accagtttccatcaacaccacatcaatagaccccttaaataattgaacaaaaaccagccacctaaacttcctggtaccagtaaattacaattacttagta |
4871373 |
T |
|
| Q |
220 |
gatattgatatgtcttgttgcattgatgtttcagaaatgtgtggctggagggcaatctttgggtcgtaacttccagaatatcttcgagcagcgattgatt |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4871374 |
gatattgatatgtcttgttgcattgatgtttcagaaatgtgtggctggagggcaatctttgggtcgtaacttccacaatatcttcgagcagcgattgatt |
4871473 |
T |
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| Q |
320 |
ttgggag |
326 |
Q |
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||||||| |
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| T |
4871474 |
ttgggag |
4871480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 119 - 330
Target Start/End: Original strand, 4845515 - 4845725
Alignment:
| Q |
119 |
aaccagttgccatcaacaccacatcaatagaccccctaaataattgaaccaaaaccagccacctaaacttcctggtacaagtaaattacaattacttagt |
218 |
Q |
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| T |
4845515 |
aaccagtttccatcaacaccacatcaatagacccc-taaataattgaacaaaaaccagccacctaaacttcctggtaccagtaaattacaattacttagt |
4845613 |
T |
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| Q |
219 |
agatattgatatgtcttgttgcattgatgtttcagaaatgtgtggctggagggcaatctttgggtcgtaacttccagaatatcttcgagcagcgattgat |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4845614 |
agatattgatatgtcttgttgcattgatgtttcagaaatgtgtggctggagggtaatctttgggtcgtaacttccacaatatcttcgagcagcgattgat |
4845713 |
T |
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| Q |
319 |
tttgggaggttt |
330 |
Q |
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|||||||||||| |
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| T |
4845714 |
tttgggaggttt |
4845725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 4826196 - 4826270
Alignment:
| Q |
206 |
acaattacttagtagatattgatatgtcttgttgcattgatgtttcagaaatgtgtggctggagggcaatctttg |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
4826196 |
acaattacttagtagatattgatatgtcttgttgcattgatgtttcagaaatgtgtgggtggagggcaatttttg |
4826270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 4841564 - 4841636
Alignment:
| Q |
15 |
cacagaccacctaaacaacccttaatatatacaatagaatcacagcagaaaaaccttaaccaaatcaagaaaaaaca |
91 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4841564 |
cacaaaccacctaaacaacccttaata----caatagaatcacagcagaaaaaccttaaccaaatcaagcaaaaaca |
4841636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 4834852 - 4834911
Alignment:
| Q |
20 |
accacctaaacaacccttaatatatacaatagaatcacagcagaaaaaccttaaccaaatcaag |
83 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4834852 |
accacccaaacaacccttaata----caatagaatcacagcagaaaaaccttaaccaaatcaag |
4834911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 4841634 - 4841687
Alignment:
| Q |
206 |
acaattacttagtagatattgatatgtcttgttgcattgatgtttcagaaatgt |
259 |
Q |
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|||||| |||||| ||||||| |||| ||||| ||||||||||||||||||||| |
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| T |
4841634 |
acaattgcttagttgatattggtatgccttgtcgcattgatgtttcagaaatgt |
4841687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 4860515 - 4860577
Alignment:
| Q |
213 |
cttagtagatattgatatgtcttgttgcattgatgtttcagaaatgtgtggctggagggcaat |
275 |
Q |
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||||||||||||||||||| |||| || ||||||||| ||||||||| | ||||||||||| |
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| T |
4860515 |
cttagtagatattgatatgccttgccgcgttgatgttttagaaatgtgcaggtggagggcaat |
4860577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 4834922 - 4834975
Alignment:
| Q |
206 |
acaattacttagtagatattgatatgtcttgttgcattgatgtttcagaaatgt |
259 |
Q |
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||||||||||||| |||||| |||| ||||| || |||||||||||||||||| |
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| T |
4834922 |
acaattacttagttgatatttgtatgccttgtcgcgttgatgtttcagaaatgt |
4834975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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