View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_48 (Length: 370)
Name: NF13061_low_48
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 5 - 349
Target Start/End: Original strand, 36843566 - 36843910
Alignment:
| Q |
5 |
ggtagattatacttacactcataacattgagaaattggtgaggaaagtatgcatgctatcacaggagcctggtgaaactcatgaaaaccgctgtttgagg |
104 |
Q |
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| T |
36843566 |
ggtagattctacttacactcataacattgagaaattggtgaggaaagtatgcatgctatcacaggagcctggtgaaactcatgaaaacggctgtttgagg |
36843665 |
T |
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| Q |
105 |
gcctcaagcttgcaatgcctttcagcaatggtaattaatgctccatttgaattgctatacgtttcacttctgattttgcatgttttctggaacataatgt |
204 |
Q |
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| T |
36843666 |
gcctcaagcttgcaatgcctttcagcaatggtaattagtgctccatttgaattgctatacgtttcacttctgattttgcatgttttctggaacataatgt |
36843765 |
T |
|
| Q |
205 |
ttcaattcatggatgacttacttcccaatgtttattttcatctaaaattctatggttgtttgttgtgacttcattattgttttagagtcgtccagaggtg |
304 |
Q |
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| T |
36843766 |
ttcaattcatggatgacttacttcccaatgtttattttcatctaaaattctatggttgtttgttgtgacttcattattgtttcagagtcatccagaggtg |
36843865 |
T |
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| Q |
305 |
cattgtttatttaactaccttttattcttttagcaggtttggctc |
349 |
Q |
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| T |
36843866 |
cattgtttatttaactaccttttattcttttggcaggtttggctc |
36843910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 5 - 202
Target Start/End: Complemental strand, 37512677 - 37512480
Alignment:
| Q |
5 |
ggtagattatacttacactcataacattgagaaattggtgaggaaagtatgcatgctatcacaggagcctggtgaaactcatgaaaaccgctgtttgagg |
104 |
Q |
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| T |
37512677 |
ggtagattctacttacactcataacattgagaaattggtgaggaaagtatgcatgctatcacaggagccaggtgaaacacatgaaaaccgctgtttgagg |
37512578 |
T |
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| Q |
105 |
gcctcaagcttgcaatgcctttcagcaatggtaattaatgctccatttgaattgctatacgtttcacttctgattttgcatgttttctggaacataat |
202 |
Q |
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| T |
37512577 |
gcctcaagcttgcaatgcctttcagcaatggtaactagtgctccatttgaattgttatgcgtttcacttccaaatttgcatgttttctggaacataat |
37512480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 220 - 286
Target Start/End: Complemental strand, 37512186 - 37512120
Alignment:
| Q |
220 |
acttacttcccaatgtttattttcatctaaaattctatggttgtttgttgtgacttcattattgttt |
286 |
Q |
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| T |
37512186 |
acttactttccaatgtttattttcatgtaaaattttgtggttgtttgttgtgacttcattatcgttt |
37512120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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