View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_49 (Length: 360)
Name: NF13061_low_49
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_49 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 34314376 - 34314723
Alignment:
| Q |
1 |
ttaaattgaatagtcaaaagaggagtattatatcaagtgaacaatttgtttgtgagagttcacgatggttgatattgtaaatatgtttgagaatcagtta |
100 |
Q |
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| T |
34314376 |
ttaaattagatagccaaaagaggagtgttatatcaagcgaacaatttgtttgtgagagttcacgatggttgatattataaatatgtttcggaatcagcta |
34314475 |
T |
|
| Q |
101 |
atttgtgatcattctgtctgaatctctattgtaacttttctgctattttctcttacatactttatgttaaggaaatagtctctttgtttttaatatattc |
200 |
Q |
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||||||||||||||||| ||||||||||| |||||||||| |||| |||||||||||| |||||| ||||| ||||| ||||| ||| |||||||||| |
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| T |
34314476 |
atttgtgatcattctgtatgaatctctatcgtaacttttcgactatcttctcttacatattttatgctaagggaatagactcttagttcttaatatattt |
34314575 |
T |
|
| Q |
201 |
cgttttgatttcttnnnnnnnnnnntagaaattaata--atatatactactctcttgtatcaagttgtcattattattcaagactttgtattttattgga |
298 |
Q |
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| T |
34314576 |
cattttgatttcgt--aaaaaaaaataggaattaataatatatatactactctcttgtatcaagttgtcattattattcaagactttgtattttattgga |
34314673 |
T |
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| Q |
299 |
attgcagtctcattctttatcttctttattcttctctataagtctatatt |
348 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34314674 |
attgcagtctcattctttatcttctttattcttctctataagtctatatt |
34314723 |
T |
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