View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_50 (Length: 359)
Name: NF13061_low_50
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_50 |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 95247 - 95445
Alignment:
| Q |
18 |
gtattgagttcataatcatgaaaatttggctgagctagctgaagaagttggtcctcaaaaaatgcaaattcatccattacagccatgttttgcatcactg |
117 |
Q |
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| T |
95247 |
gtattgagttcatagtcatgaaaatttggttatgccagctgaagaggttggtcctcaaaaaatgcaaattcatccattacacccatgtttggcatgactg |
95346 |
T |
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| Q |
118 |
gataaattgatattttcatcttgcaagattctttcttgaatcacaataacatatatacaattatggatcatgtgtctattaatagtcaatgattaacta |
216 |
Q |
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| T |
95347 |
gataaattgatattttcatcttgcaagattctttcctgaatcacaataacatatatacaattatggatcatgtgtctattaatagtcaatgattaacta |
95445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 216 - 348
Target Start/End: Original strand, 95918 - 96050
Alignment:
| Q |
216 |
agaagaaataaacttattactagatagaatagataaaataattttgacttagctggcgctttcgaactttagcaagagatatttcgaattcatgttcaat |
315 |
Q |
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| T |
95918 |
agaagaaataaactaattactagatagaatagataaaataattttgactaacctggcgctttcgaactttagcaagagatatttctaattcatgttcaat |
96017 |
T |
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| Q |
316 |
tttagtcaagtcatcaaactgtaaacccttcat |
348 |
Q |
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| T |
96018 |
tttagtcaagtcatcaaaccgtaaagccttcat |
96050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 243 - 340
Target Start/End: Complemental strand, 14180040 - 14179943
Alignment:
| Q |
243 |
aatagataaaataattttgacttagctggcgctttcgaactttagcaagagatatttcgaattcatgttcaattttagtcaagtcatcaaactgtaaa |
340 |
Q |
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| T |
14180040 |
aatagataaattaatttcgactaacctgacggtttcgaacttttgcaagagagatctctaattcatgttcaattttactcaagtcatcaaactgtaaa |
14179943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 116 - 210
Target Start/End: Complemental strand, 14180587 - 14180496
Alignment:
| Q |
116 |
tggataaattgatattttcatcttgcaagattctttcttgaatcacaataacatatatacaattatggatcatgtgtctattaatagtcaatgat |
210 |
Q |
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| T |
14180587 |
tggataaattcatgttttcatcttgcaagattctttcctgaatcac---aacatatatacaattattaatgatgtgtctattaatgatcaatgat |
14180496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 14180931 - 14180878
Alignment:
| Q |
64 |
gttggtcctcaaaaaatgcaaattcatccattacagccatgttttgcatcactg |
117 |
Q |
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| T |
14180931 |
gttggtcctcaaaaaatgcaaactgatccatcacagccttgttttccatcactg |
14180878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 10833070 - 10832998
Alignment:
| Q |
275 |
tttcgaactttagcaagagatatttcgaattcatgttcaattttagtcaagtcatcaaactgtaaacccttca |
347 |
Q |
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| T |
10833070 |
tttcgaactttagcaagagatgattccaagtcattttcaattttaatcaaatcatgaaatcgtaaacccttca |
10832998 |
T |
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