View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_51 (Length: 356)
Name: NF13061_low_51
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 39366099 - 39365758
Alignment:
| Q |
1 |
tcaaccgcatatattaaattggacctgatctatatatgtgccttaacttcagcagaatcaatacatgtgacagtgtgacattgtcacattgaggtggttg |
100 |
Q |
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| T |
39366099 |
tcaaccgcatatattaaattggacctgatctatatatgtgccttaacttcagcagaatcaatacatgtgacagtgtgacattgtcacattgaggtggttg |
39366000 |
T |
|
| Q |
101 |
atccattcataaagcaatgctccactttgcttcaagttctaatctcaaaatccttaaaa----aagactataagaacttaaagtcggtgcatttaggcct |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39365999 |
atccattcataaagcaatgctccactttgcttcaagttctaatctcaaaatccttaaaaaagaaagactataagaacttaaagtcggtgcatttaggcct |
39365900 |
T |
|
| Q |
197 |
gcccaattaatattttatatgattcact-acccctaaaaatataaacccatccctacatcctatgacaagcaattaaagatatgaggcctcaaccatcaa |
295 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39365899 |
gcccaattaatattttatatgattcactgacccctaaaaatataaacccatccctacatcccatgacaagcaattaaagatatgaggcctcaaccatcaa |
39365800 |
T |
|
| Q |
296 |
agcttccttctatatattcatttacatttagctagcataagg |
337 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
39365799 |
agcttccttctatatattcatttacatttagctagcataagg |
39365758 |
T |
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