View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_53 (Length: 350)
Name: NF13061_low_53
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 125 - 331
Target Start/End: Original strand, 4484925 - 4485131
Alignment:
| Q |
125 |
attactactactctcttccagcaataagcatgcactatttctgcaatgcattttatgtatgtcgtaccattgttagctagtctcaccagaaaaggccatc |
224 |
Q |
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| T |
4484925 |
attactactactctcttccagcaataagcatgcactatttctgcaatgcattttatgtatgtcgtaccattgttagctagtctcactagaaaaggccatc |
4485024 |
T |
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| Q |
225 |
gattattcatcaacggtggggttatggtaggtgctgcaaaggatatgataggaacttgagctttgtttcctatatcttccattatagctgcttctggcca |
324 |
Q |
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| T |
4485025 |
gattattcatcaaaggtggggtaatggtaggtgctgcaaaggatatgataggaacttgagctttgcttcctatatcttccattatagctgcttctggcca |
4485124 |
T |
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| Q |
325 |
tgtgtgc |
331 |
Q |
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||||||| |
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| T |
4485125 |
tgtgtgc |
4485131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 23 - 327
Target Start/End: Original strand, 4488990 - 4489294
Alignment:
| Q |
23 |
ggaaggattaagcagtgctcaatcattgaatccacatcttgaagggcttcacgtaacagggttagcatcccataatctccaccatacccatcatctttgt |
122 |
Q |
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||||||| ||||| |||||| |||||||| ||||| || ||||| || ||| || ||| | ||||||||| ||||||||||| ||||| | ||||| || |
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| T |
4488990 |
ggaaggactaagcggtgctcgatcattgagtccacgtcctgaagtgcctcagctagcagagctagcatcccgtaatctccaccgtacccgttatcttcgt |
4489089 |
T |
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| Q |
123 |
agattactactactctcttccagcaataagcatgcactatttctgcaatgcattttatgtatgtcgtaccattgttagctagtctcaccagaaaaggcca |
222 |
Q |
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| T |
4489090 |
agattactactactttcttccagctataagcctgcactatttctgcaatgcattttatatatgctgtaccagtgttagctagtctcaccagaaaaggcca |
4489189 |
T |
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| Q |
223 |
tcgattattcatcaacggtggggttatggtaggtgctgcaaaggatatgataggaacttgagctttgtttcctatatcttccattatagctgcttctggc |
322 |
Q |
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| T |
4489190 |
ccgagcttccatcaatggtggggtaatggtaggagctacaaaggatatgactggaacttgagctttgcttcctacttcagccaccatagctgcttcttgc |
4489289 |
T |
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| Q |
323 |
catgt |
327 |
Q |
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||||| |
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| T |
4489290 |
catgt |
4489294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 4484008 - 4484127
Alignment:
| Q |
9 |
gagaagaaatcaagggaaggattaagcagtgctcaatcattgaatccacatcttgaagggcttcacgtaacagggttagcatcccataatctccaccata |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4484008 |
gagaagaaatcaagggaaggattaagcagtgctcaatcattgaatccacatcttgaagggcttcacctaacagggttagcatcccataatctccaccata |
4484107 |
T |
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| Q |
109 |
cccatcatctttgtagatta |
128 |
Q |
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|||||||||||||||||||| |
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| T |
4484108 |
cccatcatctttgtagatta |
4484127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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