View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_54 (Length: 347)
Name: NF13061_low_54
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 94; Significance: 8e-46; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 226 - 323
Target Start/End: Complemental strand, 38937723 - 38937626
Alignment:
| Q |
226 |
ttgtaacaacctctacgcaaacaagtaaacgagccatttttgtccaaaggatatcatagatggaagatctatcactcggcaccaccgcagccaacata |
323 |
Q |
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| T |
38937723 |
ttgtaacaacctctacgcaaacaagtaaacgagccatttttgtccaaacgatatcatagatggaagatctatcactcggcaccaccgcagccaacata |
38937626 |
T |
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Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 92 - 188
Target Start/End: Complemental strand, 38937821 - 38937725
Alignment:
| Q |
92 |
acttagaaaagaccaaatgcgtctgaagactccacatcccacaaaaagatggtatgcacttgtacacaaacctgaattagcctcgataactccacga |
188 |
Q |
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| T |
38937821 |
acttggaaaagaccaaatgcgtctgaagactccacatcccacaaaaagatggtatgaacttgtacacaaacctgaattagccttgataactccacga |
38937725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 38938564 - 38938503
Alignment:
| Q |
20 |
tcaatcaggatttcaagtaaagcgtaagccattttgttggtatgagaacagaatgaatcaag |
81 |
Q |
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| T |
38938564 |
tcaatcaggatttcaagtaaagcgtcagccattttgcaggtatgagaacagaatgaatcaag |
38938503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 16658965 - 16659014
Alignment:
| Q |
23 |
atcaggatttcaagtaaagcgtaagccattttgttggtatgagaacagaa |
72 |
Q |
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| T |
16658965 |
atcacgattccaagtaaagcttcagccattttgtaggtatgagaacagaa |
16659014 |
T |
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