View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13061_low_6 (Length: 683)
Name: NF13061_low_6
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 620; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 23 - 665
Target Start/End: Original strand, 37808555 - 37809198
Alignment:
| Q |
23 |
ctgaagaagaatcaaatggctctcagcaattataatattaatgaaattaaaatgaaaaatcttgaaaaacacta-gttctacaaattcaaatcaaatttc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37808555 |
ctgaagaagaatcaaatggctctcagcaattataatattaatgaaattaaaatgaaaaatcttgaaaaacactaagttctacaaattcaaatcaaatttc |
37808654 |
T |
|
| Q |
122 |
ctcctttctacattccgaattagatatatcaacaatctcagccctctcattctctggcaaaatcgaccaatttggagactgcacagcacgcaaccaccgg |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37808655 |
ctcctttctacattccgaattagatatatcaacaatctcagccctctcattctctggcaaaatcgaccaatttggagactgcacagcacgcaaccaccgg |
37808754 |
T |
|
| Q |
222 |
aaatcatccacattggcccaatttcccgtctccacatcaagaccagcaccatgaagatcttcttcaatccctcggtaactcaaacaatagggcgcaaatc |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37808755 |
aaatcatccacattggcccaatttcccgtctccacatcaagaccagcaccatgaagatctccttcaatccctcggtaactcaaacaatagggcgcaaatc |
37808854 |
T |
|
| Q |
322 |
tcacaccaatacaatcctcaacaataggcctgctcctaaccctaagatagaaatcacttctcttagcaccatgaatccgaatctgatgcgatgcaataac |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37808855 |
tcacaccaatacaatcctcaacaataggcctgctcctaaccctaagatagaaatcacttctcttagcaccatgaatccgaatctgatgcgatgcaataac |
37808954 |
T |
|
| Q |
422 |
aaaaacacaaccctcaacttcctcaatcaaaattgatcccgtcaccggaccaacataaaccctacaattcttcaatctatgaacaaaaagtgccctaaca |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37808955 |
aaaaacacaaccctcaacttcctcaatcaaaattgatcccgtcaccggaccaacataaaccctacaattcttcaatctatgaacaaaaagtgccctaaca |
37809054 |
T |
|
| Q |
522 |
caaccaattatcctgacttcacacgaatcaagatccgaaactgtgaattccccaacctcggattctttaaactccccaatcaatacctcgccagttttgt |
621 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37809055 |
caaccaattatcctgacttcacacgaatcaagatccgaaactgtgaactccccaaactcagattctttaaactccccaatcaatacctcgccagttttgt |
37809154 |
T |
|
| Q |
622 |
tcctaaaccctggagaatcacgcacagtaaaactggattgaacc |
665 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37809155 |
tcctaaaccctggagaatcacgcacagtaaaactggattgaacc |
37809198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 6e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 515 - 655
Target Start/End: Complemental strand, 49047319 - 49047179
Alignment:
| Q |
515 |
cctaacacaaccaattatcctgacttcacacgaatcaagatccgaaactgtgaattccccaacctcggattctttaaactccccaatcaatacctcgcca |
614 |
Q |
| |
|
||||| ||||||| ||||||| |||||||||||||| |||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| || |
|
|
| T |
49047319 |
cctaatacaaccagttatcctcacttcacacgaatccagatccgaaatcgtgaattccccaacctccgattcattaaactccccaatcaatacctcaccg |
49047220 |
T |
|
| Q |
615 |
gttttgttcctaaaccctggagaatcacgcacagtaaaact |
655 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
49047219 |
gttttgttcctaaaccctggagaatcgcgcaccgtaaaact |
49047179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 321 - 439
Target Start/End: Complemental strand, 49047441 - 49047324
Alignment:
| Q |
321 |
ctcacaccaatacaatcctcaacaataggcctgctcctaaccctaagatagaaatcacttctcttagcaccatgaatccgaatctgatgcgatgcaataa |
420 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | ||| |||||||||| |
|
|
| T |
49047441 |
ctcacaccattacaatcctcaacaataggcctgctcctaaccctaagatagaaatcacttctcttagcaccaagaatctaaat-taatgtgatgcaataa |
49047343 |
T |
|
| Q |
421 |
caaaaacacaaccctcaac |
439 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
49047342 |
caaaaacaaaaccctcaac |
49047324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 60 - 88
Target Start/End: Complemental strand, 40279910 - 40279882
Alignment:
| Q |
60 |
ttaatgaaattaaaatgaaaaatcttgaa |
88 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
40279910 |
ttaatgaaattaaaatgaaaaatcttgaa |
40279882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University