View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_62 (Length: 290)
Name: NF13061_low_62
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_62 |
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Alignment Details
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 10122856 - 10122973
Alignment:
| Q |
7 |
ctgaaatgaaataccatgaaaactaagatatacacagaaagataaaaggaatttttgaactttgtatatgtgattgtgaaaccttcataagattcttata |
106 |
Q |
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| T |
10122856 |
ctgaaatgaaataccatgaaaactaaggtatacacagaaagataaaaggaatttttgaactttg--tatgtgattgtgaaaccttcataagattcttata |
10122953 |
T |
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| Q |
107 |
tgagactgctgacatgtgag |
126 |
Q |
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| T |
10122954 |
tgagactgctgacatgtgag |
10122973 |
T |
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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 212 - 274
Target Start/End: Original strand, 10123072 - 10123134
Alignment:
| Q |
212 |
catgtatgtaggggattgaaagtgaaaaatttatgagcatgttagattaagcagcctgcatgg |
274 |
Q |
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| T |
10123072 |
catgtatgtaggggattgaaagtgaaaaatttatgagcatgttagattaagcagcctgcatgg |
10123134 |
T |
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