View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_63 (Length: 284)
Name: NF13061_low_63
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_63 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 77 - 266
Target Start/End: Original strand, 3248999 - 3249188
Alignment:
| Q |
77 |
ttgatttcatcccaaaaagaggattagaaatcacaacatcatcctcattttcttcctcatgcaatttctctgtgtcatgtagttcattcaagcttccaag |
176 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3248999 |
ttgagttcatcccaaaaagaggattagaaatcacaacatcatcctcatcttcttcctcatgcaatttctctgtgtcatgtagttcattcaagcttccaag |
3249098 |
T |
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| Q |
177 |
tcgtaaatggaaatcaggggagttggttatgttgtgtagttcagtagcagcctgttcagaatgtgtatttttagtattggttgtttcaag |
266 |
Q |
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| T |
3249099 |
tcgtaaatggaaatcaggggagttggttatgttgtgtagttcagtagcagcctgttcagaatgtgtatttttagtattggttgtttcaag |
3249188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 112 - 266
Target Start/End: Complemental strand, 36905596 - 36905442
Alignment:
| Q |
112 |
acatcatcctcattttcttcctcatgcaatttctctgtgtcatgtagttcattcaagcttccaagtcgtaaatggaaatcaggggagttggttatgttgt |
211 |
Q |
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||||||||||||||| ||||||||||||| || |||||| |||||| ||||||||||||||||| |||||||| |||||| ||| ||||||||||||| |
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| T |
36905596 |
acatcatcctcatttccttcctcatgcaagttacctgtgttatgtaggtcattcaagcttccaagacgtaaatgagaatcagaggaattggttatgttgt |
36905497 |
T |
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| Q |
212 |
gtagttcagtagcagcctgttcagaatgtgtatttttagtattggttgtttcaag |
266 |
Q |
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| T |
36905496 |
gtagttcagtagcagcctgtttagattgtgcattttcagtattggtggtttcaag |
36905442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 36905722 - 36905621
Alignment:
| Q |
10 |
agatgaattgtactatcttcctgcaacctgtcaaaaggattatgtagagttaaagcagagggtgattttgatttcatcccaaaaagaggattagaaatca |
109 |
Q |
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| T |
36905722 |
agatgaattgcactatcttcctgcaacctgttaaaaggattatgtagagttaaagcagagggtgattttgagttcatcccaaaaagaggatttgaaatca |
36905623 |
T |
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| Q |
110 |
ca |
111 |
Q |
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|| |
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| T |
36905622 |
ca |
36905621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 3248952 - 3248998
Alignment:
| Q |
9 |
gagatgaattgtactatcttcctgcaacctgtcaaaaggattatgta |
55 |
Q |
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| T |
3248952 |
gagatgaattgtactatcttcctgcaacctgtcaaaagtattatgta |
3248998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 128 - 266
Target Start/End: Original strand, 28102423 - 28102561
Alignment:
| Q |
128 |
cttcctcatgcaatttctctgtgtcatgtagttcattcaagcttccaagtcgtaaatggaaatcaggggagttggttatgttgtgtagttcagtagcagc |
227 |
Q |
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||||||||||||| | ||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28102423 |
cttcctcatgcaagtactcggtgtcatgtaggtcattcaagcttccaagtcgtaaatgagaatcaggggagttggttatgttgtgtagttcagtagcagc |
28102522 |
T |
|
| Q |
228 |
ctgttcagaatgtgtatttttagtattggttgtttcaag |
266 |
Q |
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||||||||| |||||||||| | ||||||| |||||||| |
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| T |
28102523 |
ctgttcagattgtgtattttcattattggtggtttcaag |
28102561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 28102281 - 28102382
Alignment:
| Q |
10 |
agatgaattgtactatcttcctgcaacctgtcaaaaggattatgtagagttaaagcagagggtgattttgatttcatcccaaaaagaggattagaaatca |
109 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
28102281 |
agatgaattgcactatcttcctgcaacccatcaaaaggattatgtagagttaaagcagagggtgattttgagttcatcccaaaaagaggatttaaaatca |
28102380 |
T |
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| Q |
110 |
ca |
111 |
Q |
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|| |
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|
| T |
28102381 |
ca |
28102382 |
T |
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