View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13061_low_64 (Length: 284)
Name: NF13061_low_64
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_64 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 26 - 268
Target Start/End: Original strand, 52998216 - 52998452
Alignment:
| Q |
26 |
ctaacataagagaatacagttggaatgaactaatctgcaacgaactaatcagaagttaaactaacttataacaaatttataatactaaaatttacacaca |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52998216 |
ctaacataagagaatacagttggaatgaactaacctgcaacgaactaatcagaagttaaactaacttataacaaatttataatactaaaatttacacaca |
52998315 |
T |
|
| Q |
126 |
caacaaaattaattaatattgggggcggaatatatgcacatgcagtactactcctcatatatatcccacatttagaatgcatattataagagataaggga |
225 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52998316 |
caacaaaattaattaatattgggtgcggaatatatgcacatgcagtactactcctc------atcccacatttagaatgcatattataagagataaggga |
52998409 |
T |
|
| Q |
226 |
ttggctgcatacaatgtggtcctcgttctatctacaatatatt |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
52998410 |
ttggctgcatacaatgtggtcctcgttctatctgcaatatatt |
52998452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University