View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_65 (Length: 281)
Name: NF13061_low_65
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 23 - 263
Target Start/End: Complemental strand, 50579733 - 50579493
Alignment:
| Q |
23 |
atgatgcagtatctgcatgaagattttccttctgctcctcataatttcctttacggacggaatcagcataataataattacatcaactgtagtactaccg |
122 |
Q |
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| T |
50579733 |
atgatgcagtatctgcatgaagattttccttctgctcctcgtaatttcctttacggacggaatcagcataataataattacatcaactgtagtactaccg |
50579634 |
T |
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| Q |
123 |
caccattgatgcaatattcccagttgaactaccctgcatcttcagcaacagtaggagaaggattcagcatttcagggcttaatttgaaccttggatcggg |
222 |
Q |
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| T |
50579633 |
caccaatgatgcaatattcccagttgaactaccctgcatcttcagcaacagtaggagaaggattcagcatttcagggcttaatttgaaccttggatcggg |
50579534 |
T |
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| Q |
223 |
cggaggaggaggagctaccgcaacaacacaaaccaccttgc |
263 |
Q |
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| T |
50579533 |
cggaggaggaggagctaccacaacaacacaaaccactttgc |
50579493 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 1060743 - 1060785
Alignment:
| Q |
175 |
aggagaaggattcagcatttcagggcttaatttgaaccttgga |
217 |
Q |
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| T |
1060743 |
aggagaaggattcaccatttcagggcttaatttgaatcttgga |
1060785 |
T |
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