View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_74 (Length: 250)
Name: NF13061_low_74
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_74 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 20728418 - 20728178
Alignment:
| Q |
10 |
attattctaaatatctagtgttgtgggcatccctcttagctcttacccatgcaatatgcctcagtgacactgatgtatgaactttctatgtttatggaca |
109 |
Q |
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| T |
20728418 |
attattctaaatatctagtgttgtgggcatccctcttagctcttacccatgcaatatgcctcagtgacactgatgtatgaactttctatgtttatggaca |
20728319 |
T |
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| Q |
110 |
ttgtttgtgaggctggcctcgagtgcacagttcaaacacgtagttgtgtaaactttggagagtaaaactgaattttaggttacacctgaagtccaccaga |
209 |
Q |
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| T |
20728318 |
ttgtttgtgaggctggcctcgagtgcacaattcaaacacgtagttgtgtaaattttggagagcaaaactgaattttaggttacaccggaagtccaccgga |
20728219 |
T |
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| Q |
210 |
aatttgcttttaaagcagtgacttttgtcacggcacaacaa |
250 |
Q |
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| T |
20728218 |
aatttgcttttaaaccagtgacttttgtcacggcacaacaa |
20728178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 219
Target Start/End: Original strand, 25678061 - 25678160
Alignment:
| Q |
121 |
gctggcctcgagtgcac-agttcaaacacgtagttgtgtaaactttggagagtaaaactgaattttaggttacacctgaagtccaccagaaatttgcttt |
219 |
Q |
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| T |
25678061 |
gctggcctcgagtgcacgagttcagatacgtagttgtgtaaaccttggaaagcaaaaccggatattggattgcaccggaggtccaccgaaaatttgcttt |
25678160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 249
Target Start/End: Original strand, 25358406 - 25358535
Alignment:
| Q |
121 |
gctggcctcgagtgcac-agttcaaacacgtagttgtgtaaactttggagagtaaaactgaattttaggttacacctgaagtccaccagaaatttgcttt |
219 |
Q |
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| T |
25358406 |
gctggtctcgagtgcacgagttcagatacatagttgtgtaaaccttggggagcaaaaccggatattggattgcaccggaggtccaccgaaaatttgcttt |
25358505 |
T |
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| Q |
220 |
taaagcagtgacttttgtcacggcacaaca |
249 |
Q |
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| T |
25358506 |
catttcagtgactttttccacggcacaaca |
25358535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 249
Target Start/End: Original strand, 25391437 - 25391566
Alignment:
| Q |
121 |
gctggcctcgagtgcac-agttcaaacacgtagttgtgtaaactttggagagtaaaactgaattttaggttacacctgaagtccaccagaaatttgcttt |
219 |
Q |
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| T |
25391437 |
gctggcctcgagtgcacgagttcagatacatagttgtgtaaaccttggggagcaaaaccggatattggattgcaccggaggtccaccgaaaatttgcttt |
25391536 |
T |
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| Q |
220 |
taaagcagtgacttttgtcacggcacaaca |
249 |
Q |
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| T |
25391537 |
cattttagtgactttttccacggcacaaca |
25391566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 16098485 - 16098430
Alignment:
| Q |
123 |
tggcctcgagtgcac-agttcaaacacgtagttgtgtaaactttggagagtaaaac |
177 |
Q |
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| T |
16098485 |
tggcctcgagtgaacgagttcacacacgtagttgtgtaaactttgaagagcaaaac |
16098430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 39777398 - 39777450
Alignment:
| Q |
126 |
cctcgagtgcacag-ttcaaacacgtagttgtgtaaactttggagagtaaaac |
177 |
Q |
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| T |
39777398 |
cctcgagtgcataggttcaaacacgcagttgtgtaaactttggggagcaaaac |
39777450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 177
Target Start/End: Original strand, 27049171 - 27049205
Alignment:
| Q |
143 |
aaacacgtagttgtgtaaactttggagagtaaaac |
177 |
Q |
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| T |
27049171 |
aaacacgtagttgtgtaaactttggagagcaaaac |
27049205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 238
Target Start/End: Original strand, 29360231 - 29360347
Alignment:
| Q |
123 |
tggcctcgagtgcac-agttcaaacacgtagttgtgtaaactttggagagtaaaactgaattttaggttacacctgaagtccaccagaaatttgctttta |
221 |
Q |
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||||||| ||||||| | |||| ||||| |||||||||||| ||| ||| |||| | || || |||| |||| || ||||||| ||||||||||| | |
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| T |
29360231 |
tggcctcaagtgcacgaattcagacacgcagttgtgtaaaccttgaggagcaaaatcggatattgggttgcaccggaggtccaccgaaaatttgctttca |
29360330 |
T |
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| Q |
222 |
aagcagtgacttttgtc |
238 |
Q |
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| T |
29360331 |
aggcagtgacttttgtc |
29360347 |
T |
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