View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_8 (Length: 653)
Name: NF13061_low_8
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 268 - 640
Target Start/End: Original strand, 27644128 - 27644512
Alignment:
| Q |
268 |
aatcaaaggaatagttcaacaatgacgcattgttgacatataagaatccaaaatcaagaaaattagtgttgatttgtaaaagtattatgaataaacaaga |
367 |
Q |
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| T |
27644128 |
aatcaaaggaatagttcaacaatgacgcattgttgacatataagaatccaaaatcaagaaaattagtgttgatttgtaaaagtattatgaataaacaaga |
27644227 |
T |
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| Q |
368 |
accaccaacgcactaaaaccaaaaacaaactcaaattgtattattagggcaaaggtaacatttgtaatttcaattcataatttcaacaatgggg--acaa |
465 |
Q |
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| T |
27644228 |
accaccaacgcactaaaaccacaaacaaactcaaattgtattattagggcaaaggtaacatttgtaatttcaattcatgatttcaacattggggaaaaaa |
27644327 |
T |
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| Q |
466 |
aaccctaattctgtt----------------tcataataactattctattcaatttgatcctcctcaacatcttttttatcctcaactttatcttcaatc |
549 |
Q |
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| T |
27644328 |
aaccctaattatgtttcataagaaaaacatatcataataactattctattcaatttgatcctcctcaacatcttttttattctcaactttatcttcaatc |
27644427 |
T |
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| Q |
550 |
ttttcatcggcgtcctcgtcctcgtcctcgtcttcatcttcatcttcatcaactcctgtaaaagtccaagcaagttcttcacgaagttttt |
640 |
Q |
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| T |
27644428 |
ttttcatcgg------cgtcctcgtcttcatcttcatcttcatcttcatcaactcctgtaaaagtccaagcaagttcttcacgaagctttt |
27644512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 27643946 - 27644130
Alignment:
| Q |
14 |
gagatgttgttgttgtcgcaatgttgctgttataatatcctcgcaacattgcagcgcgattttcaatcatgtgtacagccggattgtgaccaaatcatga |
113 |
Q |
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| T |
27643946 |
gagatgttgttcttgtcgcaatgttgctgttataatatcctcgcaacattgcagtgtgattttcaatcatgcgtacaaccggattgtgaccaaatcatga |
27644045 |
T |
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| Q |
114 |
accacatcagaggatttcagccattttggttcaaatcttcacactattaaactgtaatgagcgcaatcacatccgtgaccgcaat |
198 |
Q |
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| T |
27644046 |
accacatcagaggatttcagccattttggttcaaatcttcacactattaaactgtaatgagcacaatcacatctgtgaccgcaat |
27644130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 347 - 486
Target Start/End: Original strand, 27548728 - 27548868
Alignment:
| Q |
347 |
aagtattatgaataaacaagaaccaccaacgcactaaaaccaaaaacaaactcaaattgtattattagggcaaaggtaacatttgtaatttcaattcata |
446 |
Q |
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| T |
27548728 |
aagtattatgaataaacaagaaccaccaacgcactaaaactaaaaacaaacccaaattgtattattagggcaaaggtaacatttgtaatttcaattcata |
27548827 |
T |
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| Q |
447 |
atttcaacaatgggg-acaaaaccctaattctgtttcataa |
486 |
Q |
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| T |
27548828 |
atttcaacattggggaaaaaaaccataattctgtttcataa |
27548868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 577 - 640
Target Start/End: Original strand, 27548945 - 27549008
Alignment:
| Q |
577 |
tcgtcttcatcttcatcttcatcaactcctgtaaaagtccaagcaagttcttcacgaagttttt |
640 |
Q |
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| T |
27548945 |
tcgtcttcatcttcatctttgtcaactcctgtaaaactccaagcaagttcttcacgaagctttt |
27549008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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