View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_80 (Length: 245)
Name: NF13061_low_80
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_80 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 5 - 245
Target Start/End: Original strand, 43036629 - 43036869
Alignment:
| Q |
5 |
gcaaagggggtccatcttagatacaacgagattgacaatcgaatggttataaatcatgtgcaccttatattgtcaatatttagttattgtataaaatctg |
104 |
Q |
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| T |
43036629 |
gcaaagggggtccatcttagatacgacgagattgacaaacgaatggttataaatcatgtgcaccttatattgtcaatacttagttatagtataaaatctg |
43036728 |
T |
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| Q |
105 |
actcatggttgttgagcttttgcagtgtaatgtaaatattcatgtaagactgtgattcttaactaaccctgttatttccatttgctgcagctctatggtt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43036729 |
actcatggttgttgagcttttgcagtgtaatgtaaatattcatgtaagactgtgattcttaactaaccctgttatttccatttgctgcagctctatggtt |
43036828 |
T |
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| Q |
205 |
caaggaaggtgaattatgtgaatggactcctgtcctacatc |
245 |
Q |
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| T |
43036829 |
caaggaaggtgaattatgtgaatggactcctgtcctacatc |
43036869 |
T |
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