View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_81 (Length: 243)
Name: NF13061_low_81
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_81 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 27422466 - 27422241
Alignment:
| Q |
1 |
tttgtgttacaaagtggggtatttgcatgttcttccatttaacttcatctaatccttgaaaatgacttctataagacaataccatgtgatctcttgtccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27422466 |
tttgtgttacaaagtggggtatttgcatgttcttccatttaacttcatctaatccttgaaaatgacttctataagacaataccatgtgatctcttgtccc |
27422367 |
T |
|
| Q |
101 |
ttactaggccctatcacagctcatcaaaatactttcattggataattggtttgtagagtcccttagcaactatttatacactactctttgggtctcaagt |
200 |
Q |
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| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27422366 |
tcactaggccctatcacagctcatcaaaatactttcattggctaattggtttgtagagtcccttagcaactatttatacactactctttgggtctcaagt |
27422267 |
T |
|
| Q |
201 |
aacacaagtcttttgcatcataaatt |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
27422266 |
aacacaagtcttttgcatcataaatt |
27422241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 2 - 226
Target Start/End: Complemental strand, 27414821 - 27414593
Alignment:
| Q |
2 |
ttgtgttacaaagtggggtatttgcatgttcttccatttaacttcatctaatcctt-gaaaatgacttctataagacaataccatgtgatctcttgtccc |
100 |
Q |
| |
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|||||||||| ||| |||||| |||||||||||||||||| ||||||||||| || |||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
27414821 |
ttgtgttacagagtagggtatgtgcatgttcttccatttagcttcatctaatagtttgaaaatgacttctataggacaataccatgtgatcccttgtccc |
27414722 |
T |
|
| Q |
101 |
ttactaggccctatcacagctcatcaaaatactttcattggataattg-gtttgtagagtcccttagcaactatttataca-ctactctttg-ggtctca |
197 |
Q |
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| |||||||||||||||||||||||||||| ||| |||||| | |||| ||||||||||||||| |||||||| |||||| ||| || ||| | ||||| |
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| T |
27414721 |
tcactaggccctatcacagctcatcaaaatgcttccattggctgattgattttgtagagtcccttggcaactatatatacacctattcattgtgttctca |
27414622 |
T |
|
| Q |
198 |
agtaacacaagtcttttgcatcataaatt |
226 |
Q |
| |
|
|| ||||||||||||||||||| |||||| |
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| T |
27414621 |
agcaacacaagtcttttgcatcctaaatt |
27414593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 2 - 226
Target Start/End: Complemental strand, 27425043 - 27424807
Alignment:
| Q |
2 |
ttgtgttacaaagtggggtatttgcatgttcttccatttaacttcatcta--atccttgaaaatgacttctataagacaata--------ccatgtgatc |
91 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
27425043 |
ttgtgttacaaagtggggtatttgaatgttcttccatttaacttcatctataatccttgaaaatgacttctataagacaatagtacaataccatgtgatc |
27424944 |
T |
|
| Q |
92 |
tcttgtcccttactaggccctatcacagctcatcaaaatactttcattggataattg-gtttgtagagtcccttagcaactatttatacactactctttg |
190 |
Q |
| |
|
||||||| | ||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||| ||||||| |||| ||||||||| || || |
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| T |
27424943 |
ccttgtccgtcactaggccctatcacagctcaccaaaatactttcattggctaattgattttgtagagttccttagcttctatatatacactattccatg |
27424844 |
T |
|
| Q |
191 |
gg-tctcaagtaacacaagtcttttgcatcataaatt |
226 |
Q |
| |
|
|| ||||||| ||| |||||||||||||| |||||| |
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| T |
27424843 |
ggttctcaagcaacgtaagtcttttgcatcctaaatt |
27424807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 27566860 - 27567079
Alignment:
| Q |
9 |
acaaagtggggtatttgcatgttcttccatttaacttcatctaatccttgaaaatgacttctataagacaataccatgtgatctcttgtcccttactagg |
108 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||| || | ||||| |||||||||| || |||||| | |||| |
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| T |
27566860 |
acaaagtggggtatgtgcatgttcttccatttatcttcatctaatgcttgaaaatgacttccatgatacaatgccatgtgatccctggtccctcagtagg |
27566959 |
T |
|
| Q |
109 |
ccctatcacagctcatcaaaatactttcattggataattggtttgtagagtcccttagcaac--tatttatacactactc-tttgggtctcaagtaacac |
205 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| ||| ||||||||| || ||||||||||| ||| |||||| || || ||| | |||||| | ||| |
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| T |
27566960 |
ccctatcacagctcatcacaacactttcattggctaagtggtttgtacaggcccttagcaactatatatatacattattcttttagttctcaatcaccac |
27567059 |
T |
|
| Q |
206 |
aagtcttttgcatcataaat |
225 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
27567060 |
aagtcttttgcatcataaat |
27567079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 27571233 - 27571398
Alignment:
| Q |
19 |
gtatttgcatgttcttccatttaacttcatctaatccttgaaaatgacttctataagacaataccatgtgatctcttgtcccttactaggccctatcaca |
118 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||| | ||||| ||| ||||| | |||| ||| |
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| T |
27571233 |
gtatttgcatgttcttatatttagcttcatctaatccttgaaaatgacctctataagacaataccatgtgaacccttgtacctaactagactctattaca |
27571332 |
T |
|
| Q |
119 |
gctcatcaaaatactttcattggataattggtttg-tagagtcccttagcaactatttatacacta |
183 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| | ||| |||||||||||||| ||||||||| |
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|
| T |
27571333 |
atccatcaaaatacattcattggttaattggtttgtttgagacccttagcaactatatatacacta |
27571398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 9 - 180
Target Start/End: Complemental strand, 27419605 - 27419437
Alignment:
| Q |
9 |
acaaagtggggtatttgcatgttcttccatttaacttcatctaatccttgaaaatgacttctataagacaataccatgtgatctcttgtcccttactagg |
108 |
Q |
| |
|
|||| ||||||||| |||||| ||||||||| | |||| |||||||||||||| | | |||| ||||||||||||||||| ||||||| | ||| | |
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| T |
27419605 |
acaatgtggggtatgtgcatgctcttccattaagcttc--ctaatccttgaaaaa-atatgtataggacaataccatgtgatcccttgtccttcacttga |
27419509 |
T |
|
| Q |
109 |
ccctatcacagctcatcaaaatactttcattggataattggtttgtagagtcccttagcaactatttataca |
180 |
Q |
| |
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||||||||||||||| |||| ||| |||| || |||||||||||||||| ||||||| |||||| |||||| |
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|
| T |
27419508 |
ccctatcacagctcaccaaattacattcactgattaattggtttgtagaggcccttagaaactatatataca |
27419437 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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