View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_84 (Length: 239)
Name: NF13061_low_84
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_84 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 47343716 - 47343921
Alignment:
| Q |
19 |
tccaccactttgttactagaaccctgtcccttccatttgaaatggaacaaccaattctcttttcctcgcacacacaccttcataacttcaatatcaatac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47343716 |
tccaccactttgttactagaaccctgtcccttccatttgaaatggaacaaccaattctcttttcctcgcacacacaccttcataacttcaatatcaatac |
47343815 |
T |
|
| Q |
119 |
ccaacataaagtcacacaataacaccatcaaattcaaatgtcacttaagccaaaatcataaaaccccctcctcaataacttctaattccaattccaattc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
47343816 |
ccaacataaagtcacacaataacaccatcaaattcaaatgtcacttaagccaaaatcataaaacccccacctcaataacttctaattccaattccaattc |
47343915 |
T |
|
| Q |
219 |
caattc |
224 |
Q |
| |
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|||||| |
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|
| T |
47343916 |
caattc |
47343921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 239
Target Start/End: Original strand, 47343899 - 47343930
Alignment:
| Q |
208 |
aattccaattccaattccaattcaaaatctct |
239 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
47343899 |
aattccaattccaattccaattcaaaatctct |
47343930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 11828540 - 11828426
Alignment:
| Q |
27 |
tttgttactagaaccctgtcccttccatttgaaatggaacaaccaattctcttttcctcgcacacacaccttcataacttcaatatcaatacccaacata |
126 |
Q |
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||||| ||||||||||||| ||||||||||||| ||||| || |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
11828540 |
tttgtcactagaaccctgtaccttccatttgaagtggaagaagcaattctcttttcctcgcactcacaccttcagaacttcaatatcaatacccaacata |
11828441 |
T |
|
| Q |
127 |
aagtcacacaataac |
141 |
Q |
| |
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|| |||||||||||| |
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| T |
11828440 |
aaatcacacaataac |
11828426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 23097762 - 23097645
Alignment:
| Q |
27 |
tttgttactagaaccctgtcccttccatttgaaatggaacaaccaattctcttttcctcgcacacacaccttcataacttcaatatcaataccc---aac |
123 |
Q |
| |
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||||| |||||||||||| |||||||||||||||||||| || ||||||| |||||||||||| |||||||| | ||||||||||||||||||| ||| |
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| T |
23097762 |
tttgtcactagaaccctgccccttccatttgaaatggaagaagcaattctattttcctcgcactcacaccttaacaacttcaatatcaatacccaacaac |
23097663 |
T |
|
| Q |
124 |
ataaagtcacacaataac |
141 |
Q |
| |
|
||||| |||||||||||| |
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|
| T |
23097662 |
ataaaatcacacaataac |
23097645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 27027850 - 27027879
Alignment:
| Q |
200 |
ctaattccaattccaattccaattccaatt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
27027850 |
ctaattccaattccaattccaattccaatt |
27027879 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 232
Target Start/End: Complemental strand, 35047572 - 35047537
Alignment:
| Q |
197 |
cttctaattccaattccaattccaattccaattcaa |
232 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |
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|
| T |
35047572 |
cttccaattccaattccaattccaattccaattcaa |
35047537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Complemental strand, 2608267 - 2608239
Alignment:
| Q |
202 |
aattccaattccaattccaattccaattc |
230 |
Q |
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||||||||||||||||||||||||||||| |
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|
| T |
2608267 |
aattccaattccaattccaattccaattc |
2608239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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