View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_88 (Length: 227)
Name: NF13061_low_88
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_88 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 27422708 - 27422482
Alignment:
| Q |
1 |
tggttcatagtggctcatgttcttgtgttcaatatcggttctcttctctcctcctcacactgttccaacacaagcctaacaagttgcacaaaaatctgag |
100 |
Q |
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| T |
27422708 |
tggttcatagtggctcatgttcttgtgttcaatatcggttctcttctctcctcctcacactgttccaacacaagcctaacaagttgcacacaaatctgag |
27422609 |
T |
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| Q |
101 |
atgtatttagttggtagatgtatattagctacaacatcaattagaagaagcatatgagatgtctaatggatgtcaaccattggattagctatagcagaaa |
200 |
Q |
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| T |
27422608 |
atgtatttagctggtagatgtatattagctataacatcaattagaagaaacatatgagatgtctaatggatgtcaaccattggattagctatagcagaaa |
27422509 |
T |
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| Q |
201 |
acatcaggtttctttcatcaatccact |
227 |
Q |
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| T |
27422508 |
acatcaggtttctttcatcaatccact |
27422482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 27412161 - 27412058
Alignment:
| Q |
1 |
tggttcatagtggctcatgttcttgtgttcaatatcggttctcttctctcctcctcacactgttccaacacaagcctaacaagttgcacaaaaatctgag |
100 |
Q |
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| T |
27412161 |
tggttcatagtagctcaagttcttgtgttcaatatcggttcgcttctttcctcctcacaccgttccatcacaagcctaacaagttgcacataaatctaag |
27412062 |
T |
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| Q |
101 |
atgt |
104 |
Q |
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|||| |
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| T |
27412061 |
atgt |
27412058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 81 - 193
Target Start/End: Complemental strand, 27419803 - 27419691
Alignment:
| Q |
81 |
aagttgcacaaaaatctgagatgtatttagttggtagatgtatattagctacaacatcaattagaagaagcatatgagatgtctaatggatgtcaaccat |
180 |
Q |
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| T |
27419803 |
aagtttcacataaatatgatatatattcagttggtagatgtatatttgctgcaatgtcaattagaagaaacatgtgagatgtctaaagcatgtctacaat |
27419704 |
T |
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| Q |
181 |
tggattagctata |
193 |
Q |
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||||||| ||||| |
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| T |
27419703 |
tggattatctata |
27419691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 217
Target Start/End: Original strand, 27566735 - 27566815
Alignment:
| Q |
137 |
tcaattagaagaagcatatgagatgtctaatggatgtcaaccattggattagctatagcagaaaacatcaggtttctttca |
217 |
Q |
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| T |
27566735 |
tcaattacaagaaacatacgagatgtctaaagcatgtctaccattggattagctatagcaacaaattccaggtttctttca |
27566815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 27414889 - 27414841
Alignment:
| Q |
179 |
attggattagctatagcagaaaacatcaggtttctttcatcaatccact |
227 |
Q |
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| T |
27414889 |
attggattagctatagcaacaaacatcaagtttctttcaccaatccact |
27414841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 27415072 - 27415010
Alignment:
| Q |
1 |
tggttcatagtggctcatgttcttgtgttcaatatcggttctcttctctcctcctcacactgtt |
64 |
Q |
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| T |
27415072 |
tggttcatagaggcccatgatcttgtgttcaaaattggttctctt-tttcctcctcacactgtt |
27415010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 27570794 - 27570856
Alignment:
| Q |
68 |
acacaagcctaacaagttgcacaaaaatctgagatgtatttagttggtagatgtatattagct |
130 |
Q |
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| T |
27570794 |
acacaagctttacaagttgcacataaatctgatatatattcaaatggtagatgtatattagct |
27570856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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