View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_91 (Length: 217)
Name: NF13061_low_91
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_91 |
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Alignment Details
Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 6500644 - 6500746
Alignment:
| Q |
60 |
gttcatctcccaagcacctttaccaatcccgctttcttccaacaactcgc--gctttcatgctaaccctacaatctaacacagcatttccaaaataatgt |
157 |
Q |
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| T |
6500644 |
gttcatctcccaagcacctttaccaatcccgccttcttccaacaactcaccagctttcatgctaaccctacaatctatcacagcatttccaaaataatct |
6500743 |
T |
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| Q |
158 |
tgt |
160 |
Q |
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||| |
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| T |
6500744 |
tgt |
6500746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 6500792 - 6500852
Alignment:
| Q |
157 |
ttgtaaacttcttcttggtgggtcaagttttttggaatggatcacagaacgccaaatgtga |
217 |
Q |
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| T |
6500792 |
ttgtaaacttcttcttggtgggtcaagttttttggaatggatcacagaacgccaaatgtga |
6500852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 155
Target Start/End: Complemental strand, 40147346 - 40147229
Alignment:
| Q |
40 |
gactgcaacgaaatcatcttgttcatctcccaagcacctttaccaatcccgctttcttccaacaa--ctcgcgctttcatgctaaccctacaatctaaca |
137 |
Q |
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| T |
40147346 |
gactgcaaagaaatcattttgtgtatcgcccaagcacctttaccaagcccaccatcttccaacaactctcccgctttcattgtaaccctacaaacttcaa |
40147247 |
T |
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| Q |
138 |
cagcatttccaaaataat |
155 |
Q |
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| T |
40147246 |
cagcatttccaaaataat |
40147229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 8102622 - 8102666
Alignment:
| Q |
63 |
catctcccaagcacctttaccaatcccgctttcttccaacaactc |
107 |
Q |
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| T |
8102622 |
catcttccaagcacatttaccaaacccgccttcttccaacaactc |
8102666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 15744933 - 15744880
Alignment:
| Q |
32 |
tctcatcagactgcaacgaaatcatcttgttcatctcccaagcacctttaccaa |
85 |
Q |
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| T |
15744933 |
tctcatcagattgcaaagcaatcatcttgttcatctccaaagcacctttaccaa |
15744880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 39082491 - 39082550
Alignment:
| Q |
30 |
tttctcatcagactgcaacgaaatcatcttgttcatctcccaagcacctttaccaatccc |
89 |
Q |
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|||||||||||| ||||| ||||||||||||||||||| ||||| |||| |||||||| |
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| T |
39082491 |
tttctcatcagaacgcaacataatcatcttgttcatctccaaagcaacttttccaatccc |
39082550 |
T |
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