View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13061_low_96 (Length: 205)
Name: NF13061_low_96
Description: NF13061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13061_low_96 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 4 - 205
Target Start/End: Original strand, 45363786 - 45363987
Alignment:
| Q |
4 |
attctaagaaggcagaggaatgttcttctaatcaatagtatccccaatcattactaaaacttcccttaaatacaattcctcactaattatattagagttc |
103 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45363786 |
attccaagaaggcagaggaatgttcttctaatcaatagtctccccaatcattactaaaacttcccttaaatacaattcctcactaattatattagagttc |
45363885 |
T |
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| Q |
104 |
atctctgcatgactcctcctcgagaccatgatttcagattcacttgccatgattgctaactgtattaggtgcttgaattgattgcgccacataatcattt |
203 |
Q |
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||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45363886 |
atctctgcatgactcctcctccagaccatgatttcagcttcacttgccatgattgctaactgtattaggtgcttgaattgattgcaccacataatcattt |
45363985 |
T |
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| Q |
204 |
cc |
205 |
Q |
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|| |
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| T |
45363986 |
cc |
45363987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 4 - 205
Target Start/End: Original strand, 45375026 - 45375227
Alignment:
| Q |
4 |
attctaagaaggcagaggaatgttcttctaatcaatagtatccccaatcattactaaaacttcccttaaatacaattcctcactaattatattagagttc |
103 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45375026 |
attccaagaaggcagaggaatgttcttctaatcaatagtctccccaatcattactaaaacttcccttaaatacaattcctcactaattatattagagttc |
45375125 |
T |
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| Q |
104 |
atctctgcatgactcctcctcgagaccatgatttcagattcacttgccatgattgctaactgtattaggtgcttgaattgattgcgccacataatcattt |
203 |
Q |
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||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45375126 |
atctctgcatgactcctcctccagaccatgatttcagcttcacttgccatgattgctaactgtattaggtgcttgaattgattgcaccacataatcattt |
45375225 |
T |
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| Q |
204 |
cc |
205 |
Q |
| |
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|| |
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| T |
45375226 |
cc |
45375227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 4 - 205
Target Start/End: Original strand, 45382605 - 45382806
Alignment:
| Q |
4 |
attctaagaaggcagaggaatgttcttctaatcaatagtatccccaatcattactaaaacttcccttaaatacaattcctcactaattatattagagttc |
103 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45382605 |
attccaagaaggcagaggaatgttcttctaatcaatagtctccccaatcattactaaaacttcccttaaatacaattcctcactaattatattagagttc |
45382704 |
T |
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| Q |
104 |
atctctgcatgactcctcctcgagaccatgatttcagattcacttgccatgattgctaactgtattaggtgcttgaattgattgcgccacataatcattt |
203 |
Q |
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||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45382705 |
atctctgcatgactcctcctccagaccatgatttcagcttcacttgccatgattgctaactgtattaggtgcttgaattgattgcaccacataatcattt |
45382804 |
T |
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| Q |
204 |
cc |
205 |
Q |
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|| |
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| T |
45382805 |
cc |
45382806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 151 - 205
Target Start/End: Original strand, 45342044 - 45342098
Alignment:
| Q |
151 |
catgattgctaactgtattaggtgcttgaattgattgcgccacataatcatttcc |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45342044 |
catgattgctaactgtattaggtgcttgaattgattgcgccacataatcatttcc |
45342098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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