View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13062_high_1 (Length: 552)
Name: NF13062_high_1
Description: NF13062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13062_high_1 |
 | |
|
| [»] scaffold0140 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 20 - 538
Target Start/End: Original strand, 35052089 - 35052607
Alignment:
| Q |
20 |
gttttgatagaattgctttctccttctgccctgcggtatgcatgttcgcggataccttctgatttcttctcttccatatgcaccacaaagtcataacaaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35052089 |
gttttgatagaattgctttctccttctgccctgcagtatgcatgttcccggataccttctgatttcttctcttccatatgcaccacaaagtcataacaaa |
35052188 |
T |
|
| Q |
120 |
aataaggagttattgatgaggtagttgttcaagtagttgaatgaagagagttacatatccatatgttacttccagattatttttgatgatatgccaaagc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35052189 |
aataaggagttattgatgaggtagttgttcgagtagttgaatgaagagagttacatatccgtctgttacttccagattatctttgatgatatgccaaagc |
35052288 |
T |
|
| Q |
220 |
cccgtcgcttcccacactgcttctaaattctcacaactaaagaaaatgtggcaatcattttcataaaacctacactaaacaccgcgtgtttggagacaat |
319 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
35052289 |
cctgtcgcttccaacactgcttctaaattctcacaactaaagaaaatgtggcaatcattttcatagaacctacactaaacactgcgtgtttggagacaat |
35052388 |
T |
|
| Q |
320 |
actttgttggtaggcagccacacgccaccctccataagaaaaccttcaatttttgaggtacttatagatgccataattttgtacagctgccctccacacg |
419 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||| ||||||||| |||||||||||||||||||| |
|
|
| T |
35052389 |
actttgttggtaggcagccacacgccgccctccataagaaaaccttcaattttttgggtactttgagatcccataatttcgtacagctgccctccacacg |
35052488 |
T |
|
| Q |
420 |
taagttcgtgttatcgactaaattttccatgacgtgtcgatatgcggagctaacattgtattcaccatggggtgtaaaattccgtagatgtttgtccact |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35052489 |
taagttcgtgttatcgactaaattttccatgacgtgtcgatatgcggagctaacattgtattcaccatggggtgtaaaattccgtagatgtttgtccact |
35052588 |
T |
|
| Q |
520 |
tccacccccattgatgatg |
538 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
35052589 |
tccacccccattgatgatg |
35052607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 7e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 75 - 291
Target Start/End: Complemental strand, 43381429 - 43381213
Alignment:
| Q |
75 |
cttctgatttcttctcttccatatgcaccacaaagtcataacaaaaataaggagttattgatgaggtagttgttcaagtagttgaatgaagagagttaca |
174 |
Q |
| |
|
||||| ||||||||| ||||||||||| ||||||||||| |||||||||||||||| ||||||||| |||||||| | |||||||| |||||||||| || |
|
|
| T |
43381429 |
cttctcatttcttcttttccatatgcatcacaaagtcattacaaaaataaggagttgttgatgaggaagttgttcgaatagttgaaagaagagagttgca |
43381330 |
T |
|
| Q |
175 |
tatccatatgttacttccagattatttttgatgatatgccaaagccccgtcgcttcccacactgcttctaaattctcacaactaaagaaaatgtggcaat |
274 |
Q |
| |
|
|||||| || |||| | ||||| | |||||||||||| || |||| || | |||||||||| ||||||| || || |||| |||| ||| || |||| |
|
|
| T |
43381329 |
aatccatttgctactactagattctctttgatgatatgacacagccgcgccacttcccacacgacttctaacttgtcgcaaccaaagtaaacatgtcaat |
43381230 |
T |
|
| Q |
275 |
cattttcataaaaccta |
291 |
Q |
| |
|
|||||| ||| |||||| |
|
|
| T |
43381229 |
catttttatacaaccta |
43381213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 473
Target Start/End: Complemental strand, 43381137 - 43381005
Alignment:
| Q |
343 |
gccaccctccataagaaaaccttcaatttttgag--gtacttatagatgccataattttgtacagctgccctccacacgtaagttcgtgttatcgactaa |
440 |
Q |
| |
|
|||||| |||||| | ||||||||| ||||| || |||||| |||||||||||||| || || ||||||| |||||||||| || |||||||||||| |
|
|
| T |
43381137 |
gccaccttccatagggaaaccttcatttttttagtggtactttgagatgccataatttcgtccaattgccctctacacgtaagtccgcgttatcgactaa |
43381038 |
T |
|
| Q |
441 |
attttccatgacgtgtcgatatgcggagctaac |
473 |
Q |
| |
|
||||| ||||| |||| || | ||| ||||||| |
|
|
| T |
43381037 |
atttttcatgatgtgttgacacgcgaagctaac |
43381005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 76 - 522
Target Start/End: Complemental strand, 30843 - 30378
Alignment:
| Q |
76 |
ttctgatttcttctcttccatatgcaccacaaagtcataacaaaaataaggagttattgatgaggtagttgttcaagtagttgaatgaagagagttacat |
175 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| |||| ||||| |||||||||| |||| ||||| |||||| |||| || || |||||| |||| |
|
|
| T |
30843 |
ttctcatttcttctcttccatatataccacaaactcattacaaatataaggagttgctgattaggtaattgttcgagtaatttaa---agagagatacaa |
30747 |
T |
|
| Q |
176 |
atccatatgttacttccagattatttttgatgatatgccaaagccccgtcgcttcccacactgcttctaaattctcacaactaaagaaaatgtggcaatc |
275 |
Q |
| |
|
| ||||| |||||||||||| | |||||||||| |||| | | | | ||||||||||||||| |||| |||||||||| |||||||| || ||||| |
|
|
| T |
30746 |
acttatatgatacttccagattctctttgatgatacgccacaactctattgcttcccacactgctgctaacttctcacaaccaaagaaaacatgccaatc |
30647 |
T |
|
| Q |
276 |
attttcataaaac-----------------ctacactaaacaccgcgtgtttggagacaatactttgttggtaggcagccacacgccaccctccataaga |
358 |
Q |
| |
|
||||| ||| || |||||||||||||| | | ||| ||||| || ||||||| || || | |||||||||||| |||| || |
|
|
| T |
30646 |
attttgatacgacatatcacacaatgatcactacactaaacaccacattttttaagacagtatcttgttggcagtcatcgacacgccacccttcatagga |
30547 |
T |
|
| Q |
359 |
aaaccttca-atttttgaggtacttatagatgccataattttgtacagctgccctccacacgtaagttcgtgttatcgactaaattttccatga--cgt- |
454 |
Q |
| |
|
||||||| | |||||| ||||| |||||||||| |||||| ||| || |||||||||||| | |||||||| |||||| ||||||||| ||| |
|
|
| T |
30546 |
aaaccttaacttttttggtatactttgagatgccatagttttgtccagttgtcctccacacgtacatctgtgttatcaactaaactttccatgatgcgta |
30447 |
T |
|
| Q |
455 |
-gtcgatatgcggagctaacattgtattcaccatggggtgtaaaattccgtagatgtttgtccacttcc |
522 |
Q |
| |
|
||||||| |||||||||| | ||||||||||||||| ||||||||| || |||||| ||| ||||| |
|
|
| T |
30446 |
cgtcgataaatggagctaacactatattcaccatggggtttaaaattccatacatgtttttcctcttcc |
30378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 46016769 - 46016846
Alignment:
| Q |
82 |
tttcttctcttccatatgcaccacaaagtcataacaaaaataaggagttattgatgaggtagttgttcaagtagttga |
159 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||| | | |||| ||| | ||||||||| || ||||||||| |
|
|
| T |
46016769 |
tttcttcgcttccatatgcaccacaaagtcatgacaaaagtgataagttgttgttaaggtagttgctcgagtagttga |
46016846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 168
Target Start/End: Complemental strand, 8294418 - 8294326
Alignment:
| Q |
76 |
ttctgatttcttctcttccatatgcaccacaaagtcataacaaaaataaggagttattgatgaggtagttgttcaagtagttgaatgaagaga |
168 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||| |||| ||||| || | | || ||||||| || |||||| |||||||||| ||||||| |
|
|
| T |
8294418 |
ttctcatttcttctcttccatatgtaccacaaaatcattacaaacatcaaaacttgttgatgacttaattgttcgagtagttgaaagaagaga |
8294326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University