View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13062_high_5 (Length: 391)
Name: NF13062_high_5
Description: NF13062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13062_high_5 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 15 - 391
Target Start/End: Complemental strand, 42536255 - 42535883
Alignment:
| Q |
15 |
atcacccaaaatactcaagagtgaaagaaaagcatgcatgaaaattttccctaaacaagatcactctataactggttaaacaactaaaggatggtaggca |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42536255 |
atcacccaaaatactcaagagtgaaagaaaagcatgcataaaaaatttccctaaacaagttcactctataactggttaaacaactaaaggatggtaggca |
42536156 |
T |
|
| Q |
115 |
acaatcacaagnnnnnnnntgcttacaatgaagcctgagaagaaacaataaaacctattccttttttatcatcagttggttggagttggaccagacatga |
214 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42536155 |
acaatcacaagacaaataatgcttacaatgaagcctgagaagaaacaataaaacctattccttttttatcattagttggttggagttggaccagacatga |
42536056 |
T |
|
| Q |
215 |
acatgaccatgtctgttacccgtataaatcgtgttcctggcggtcttcattataatagagggtggttataccctccaaagcctctgtaactgacannnnn |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42536055 |
acatgaccatgtctgttacccgtataaatcgcgttc----cggtcttcatcataatagagggtggttataccctccaaagcctctgtaactgacattttt |
42535960 |
T |
|
| Q |
315 |
nnagatgaatcaatgcactccaaagcttttgtagcattaattttcgccacacatttccccgataagatgttgctcac |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42535959 |
ttagatgaatcaatgcactccaaagcttttgtagcattaattttcgccacacatttccccgataagatgttgctcac |
42535883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 31 - 391
Target Start/End: Complemental strand, 42530537 - 42530167
Alignment:
| Q |
31 |
aagagtgaaagaaaagcatgcatgaaaattttccctaaacaagatcactctataactggttaaacaactaaaggatggtaggcaacaatcacaagnnnnn |
130 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||| ||| | |||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
42530537 |
aagagtgaaagaaaagcatgcataaaagttttccctaaacaagttcattatataactggttaaacaactaaaggatggtaggaaacaatcacatgacaaa |
42530438 |
T |
|
| Q |
131 |
nnntgcttacaatgaagcctgagaagaaacaataaaacctattccttttttatcatcagttggttggagttggaccagacatgaacatgaccatgtctgt |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42530437 |
taatgcttacaatgaagcctgagaagaaacaataaaacctattccttttttatcatcagttggttggagttggaccagacatgaacaagaccatgtctgt |
42530338 |
T |
|
| Q |
231 |
tacccgtataaatcgtgttcctggcggtcttca--------ttataatagagggtggttataccctccaaagcct------ctgtaactgacannnnnnn |
316 |
Q |
| |
|
||||||||||||||| |||| ||||||||| | |||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
42530337 |
tacccgtataaatcgcgttc----cggtcttcatcataaattcataatagagggtggttataccctccaaagcctctgggactggaactgacattatttg |
42530242 |
T |
|
| Q |
317 |
agatgaatcaatgcactccaaagcttttgtagcattaattttcgccacacatttccccgataagatgttgctcac |
391 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
42530241 |
agatgaatcaatgcactccaaagcttttgcagcattaattttcgccacacatttccccgacaagatgctgctcac |
42530167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 27826073 - 27826024
Alignment:
| Q |
342 |
tttgtagcattaattttcgccacacatttccccgataagatgttgctcac |
391 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
27826073 |
tttgcagcattaattttcgccacacatttccctgtcaagatgttgctcac |
27826024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University