View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13062_high_6 (Length: 378)
Name: NF13062_high_6
Description: NF13062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13062_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 22277091 - 22277455
Alignment:
| Q |
1 |
agtgaatggaaggagagcatctagatttgagggatattaggccggaaagcctggtaaggaacacaggtcagcaggttttatcctctaggtttcttaattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22277091 |
agtgaatggaaggagagcatctagatttgagggatattaggccggaaagcctggtaaggaacacaggtcagcaggttttatcctctaggtttcttaattt |
22277190 |
T |
|
| Q |
101 |
catcttgcaaggagcaccactctaaccatatctttttctgtttcaattcagtttttgttttccagtttacatttgcaattaaaaatatacaaatattttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22277191 |
catcttgcaaggagcaccactctaaccatatctttttctgtttcaattcagtttttgttttccagtttacatttacaattaaaaatatacaaatattttc |
22277290 |
T |
|
| Q |
201 |
ctcaccctgttctggttcctatcagaagatgagaaaaagctagatgcttatcagtttattgaaatgtcaagtatatcaatttgtttctaaatttctcatc |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22277291 |
ctcaccctattctggttcctatcagaagatgagaaaaagctagatgcttatcagtttattgaaatgtcaagtatatcaatttgtttctaaatttctcatc |
22277390 |
T |
|
| Q |
301 |
tagttcatttcttaactttttccattagtacaatcttggtggtgattctagatcatgatttttct |
365 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22277391 |
tagttcatttcttaaccttttccattagtacaatcttggtggtgattctagatcatgatttttct |
22277455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University