View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13062_low_10 (Length: 293)

Name: NF13062_low_10
Description: NF13062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13062_low_10
NF13062_low_10
[»] chr4 (11 HSPs)
chr4 (28-293)||(30808353-30808620)
chr4 (171-264)||(39864108-39864201)
chr4 (167-257)||(51103618-51103708)
chr4 (186-259)||(4872569-4872642)
chr4 (205-264)||(51103382-51103441)
chr4 (171-264)||(4892403-4892496)
chr4 (206-257)||(22886713-22886764)
chr4 (206-257)||(22938377-22938428)
chr4 (205-255)||(43049387-43049437)
chr4 (206-259)||(35004495-35004548)
chr4 (214-259)||(35251686-35251731)
[»] chr2 (6 HSPs)
chr2 (171-260)||(26407423-26407512)
chr2 (171-250)||(18143966-18144045)
chr2 (182-259)||(26407670-26407747)
chr2 (171-257)||(36937529-36937613)
chr2 (174-256)||(29469541-29469623)
chr2 (206-259)||(30786444-30786497)
[»] scaffold0024 (1 HSPs)
scaffold0024 (171-259)||(70820-70908)
[»] chr1 (6 HSPs)
chr1 (171-255)||(33321293-33321377)
chr1 (171-257)||(4067137-4067222)
chr1 (171-251)||(27134110-27134190)
chr1 (186-259)||(27133842-27133915)
chr1 (171-239)||(4066925-4066993)
chr1 (171-259)||(38208279-38208367)
[»] chr3 (13 HSPs)
chr3 (171-252)||(45708469-45708551)
chr3 (171-264)||(55213983-55214076)
chr3 (171-259)||(26244881-26244969)
chr3 (171-259)||(33140534-33140622)
chr3 (169-264)||(36012669-36012764)
chr3 (171-264)||(43804145-43804238)
chr3 (205-264)||(12089007-12089066)
chr3 (171-260)||(33140298-33140387)
chr3 (171-259)||(46164076-46164164)
chr3 (173-259)||(46163842-46163928)
chr3 (187-248)||(32808182-32808243)
chr3 (171-239)||(2051510-2051578)
chr3 (173-265)||(12089251-12089342)
[»] chr7 (13 HSPs)
chr7 (171-260)||(26073165-26073254)
chr7 (171-264)||(35316100-35316193)
chr7 (171-260)||(26096952-26097041)
chr7 (187-259)||(26073417-26073489)
chr7 (187-259)||(26097204-26097276)
chr7 (186-257)||(32047258-32047329)
chr7 (171-257)||(47315-47401)
chr7 (173-257)||(25658412-25658496)
chr7 (177-260)||(32056648-32056730)
chr7 (209-257)||(36642632-36642680)
chr7 (205-264)||(33189900-33189959)
chr7 (171-261)||(33190139-33190229)
chr7 (206-259)||(21297736-21297789)
[»] chr8 (12 HSPs)
chr8 (173-264)||(42950601-42950692)
chr8 (169-257)||(5074507-5074595)
chr8 (171-259)||(7905656-7905744)
chr8 (205-260)||(11732615-11732670)
chr8 (183-258)||(38225702-38225777)
chr8 (171-255)||(23488843-23488927)
chr8 (171-259)||(38225455-38225543)
chr8 (169-255)||(34153466-34153551)
chr8 (173-259)||(42026966-42027052)
chr8 (187-257)||(16997118-16997188)
chr8 (187-259)||(23488969-23489041)
chr8 (187-259)||(42027217-42027289)
[»] chr6 (8 HSPs)
chr6 (189-258)||(10388496-10388565)
chr6 (171-258)||(67597-67684)
chr6 (188-259)||(6714532-6714603)
chr6 (171-260)||(67361-67450)
chr6 (171-264)||(30847642-30847735)
chr6 (205-259)||(10388241-10388295)
chr6 (187-259)||(30122817-30122889)
chr6 (207-259)||(35072198-35072250)
[»] chr5 (3 HSPs)
chr5 (182-257)||(22843767-22843842)
chr5 (173-255)||(36150991-36151073)
chr5 (173-226)||(13932819-13932872)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 28 - 293
Target Start/End: Complemental strand, 30808620 - 30808353
Alignment:
Q  28 atggtgggtaagagaatctgaaaatataaagataaattgagaattagctttcattcctataaccgatagatgcacaagcatgtctccatgaaatccttat 127  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30808620 atggtgggtaagagaatctgaaaatataaaggtaaattgagaattagctttcattcctataaccgatagatgcacaagcatgtctccatgaaatccttat 30808521  T
Q  128 gtcatcacaattaaaactgtcaaagacggaaactaacatatgaaccaatctgataaatgtttgacaaagacgtggaacattttgaattatta--atagag 225  Q
    |||| |||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||    
T  30808520 gtcaacacaattaaaactgtcaaagacagaaattaacagatgaaccaatctgataaatgtttgacaaagacgtggaacattttgaattattaatataaag 30808421  T
Q  226 ttagagaccaattttaaaatttggtacaaagacatagacataaccgaaagaatgtactcgagttgatc 293  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30808420 ttagagatcaatttaaaaatttggtacaaagacatagacataaccgaaagaatgtactcgagttgatc 30808353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 264
Target Start/End: Complemental strand, 39864201 - 39864108
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagacatagac 264  Q
    |||||| ||| ||| |||||||||||||  ||| |||||||| |||||||||||||  | ||||||||| ||||||||||||||||||| ||||    
T  39864201 accaatatgagaaaagtttgacaaagacagggatcattttgagttattaatagagtcggggaccaatttaaaaatttggtacaaagacagagac 39864108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 257
Target Start/End: Original strand, 51103618 - 51103708
Alignment:
Q  167 atgaaccaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaaga 257  Q
    |||||||||| ||| |||||||||| ||||||   ||  ||||||| ||||||||||||| || ||||||||| |||||||||||||||||    
T  51103618 atgaaccaatttgagaaatgtttgataaagacagagactattttgagttattaatagagtcagtgaccaatttgaaaatttggtacaaaga 51103708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 186 - 259
Target Start/End: Complemental strand, 4872642 - 4872569
Alignment:
Q  186 gtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagaca 259  Q
    |||||||||||||   || |||||||| ||||||||||||||||||| |||||| | |||||||||||||||||    
T  4872642 gtttgacaaagacagagatcattttgagttattaatagagttagagatcaatttaagaatttggtacaaagaca 4872569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 264
Target Start/End: Complemental strand, 51103441 - 51103382
Alignment:
Q  205 cattttgaattattaatagagttagagaccaattttaaaatttggtacaaagacatagac 264  Q
    |||||||||||||||||||||| || ||||||||| | ||||||||||||||||| ||||    
T  51103441 cattttgaattattaatagagtcagggaccaatttgagaatttggtacaaagacagagac 51103382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 264
Target Start/End: Complemental strand, 4892496 - 4892403
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagacatagac 264  Q
    |||||||| | |||||||||||||||||    | |||||||| |||||||||||||  ||||| ||||| | ||||||||||||||||| ||||    
T  4892496 accaatctaagaaatgtttgacaaagacagtaaccattttgagttattaatagagtcggagactaatttaagaatttggtacaaagacagagac 4892403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 257
Target Start/End: Original strand, 22886713 - 22886764
Alignment:
Q  206 attttgaattattaatagagttagagaccaattttaaaatttggtacaaaga 257  Q
    ||||||||||||||||||||| | |||||||||| |||||||| ||||||||    
T  22886713 attttgaattattaatagagtcaaagaccaatttaaaaatttgatacaaaga 22886764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 257
Target Start/End: Original strand, 22938377 - 22938428
Alignment:
Q  206 attttgaattattaatagagttagagaccaattttaaaatttggtacaaaga 257  Q
    ||||||||||||||||||||| | |||||||||| |||||||| ||||||||    
T  22938377 attttgaattattaatagagtcaaagaccaatttaaaaatttgatacaaaga 22938428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 43049387 - 43049437
Alignment:
Q  205 cattttgaattattaatagagttagagaccaattttaaaatttggtacaaa 255  Q
    |||||||||||||||||||| | ||||| |||||| | |||||||||||||    
T  43049387 cattttgaattattaatagactcagagatcaatttaagaatttggtacaaa 43049437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 35004548 - 35004495
Alignment:
Q  206 attttgaattattaatagagttagagaccaattttaaaatttggtacaaagaca 259  Q
    ||||||| ||||||||||||| || ||||||| | | |||||||||||||||||    
T  35004548 attttgagttattaatagagtcagggaccaatatgagaatttggtacaaagaca 35004495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 35251686 - 35251731
Alignment:
Q  214 ttattaatagagttagagaccaattttaaaatttggtacaaagaca 259  Q
    |||||||||||||||| |||||| || | |||||||||||||||||    
T  35251686 ttattaatagagttagggaccaaattgagaatttggtacaaagaca 35251731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 260
Target Start/End: Complemental strand, 26407512 - 26407423
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagacat 260  Q
    |||||||||| ||| |||||||||||||  ||| |||||||| |||||||||||||  || |||||||| ||||||||||||||||||||    
T  26407512 accaatctgagaaaagtttgacaaagacagggaccattttgagttattaatagagtctgaaaccaatttgaaaatttggtacaaagacat 26407423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 18143966 - 18144045
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggt 250  Q
    |||||||||||||| |||||||||| || || | |||||||| ||||||||||||| |||||||||||| ||||||||||    
T  18143966 accaatctgataaacgtttgacaaaaacatgaaccattttgagttattaatagagtcagagaccaatttaaaaatttggt 18144045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 26407670 - 26407747
Alignment:
Q  182 aaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagaca 259  Q
    ||||| |||||||||||  ||| |||||||||||||||||||||| || ||||||| | |||||||||||||||||||    
T  26407670 aaatgattgacaaagacagggaccattttgaattattaatagagtcagggaccaatatgaaaatttggtacaaagaca 26407747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 257
Target Start/End: Complemental strand, 36937613 - 36937529
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaaga 257  Q
    |||||||| | |||||||||||||||||   || ||||  || ||||||||||||| |||||||||||| | |||||||||||||||    
T  36937613 accaatctaagaaatgtttgacaaagacaaagaccatt--gagttattaatagagtcagagaccaatttgagaatttggtacaaaga 36937529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 256
Target Start/End: Complemental strand, 29469623 - 29469541
Alignment:
Q  174 aatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaag 256  Q
    ||||||| |||  ||||||||||||   || |||||||| ||||||||||||| |  ||||||||| | ||||||||||||||    
T  29469623 aatctgagaaacatttgacaaagacagcgaccattttgagttattaatagagtcaatgaccaatttgagaatttggtacaaag 29469541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 30786444 - 30786497
Alignment:
Q  206 attttgaattattaatagagttagagaccaattttaaaatttggtacaaagaca 259  Q
    ||||||| ||||||||||||| || || |||||| ||| |||||||||||||||    
T  30786444 attttgagttattaatagagtcagggatcaatttgaaagtttggtacaaagaca 30786497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 70820 - 70908
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagaca 259  Q
    |||||||||| ||| ||||||||||||| |||| ||||||||  |||||||||||| |||||||||||| | ||||| |||||||||||    
T  70820 accaatctgagaaacgtttgacaaagacatggaccattttgagctattaatagagtcagagaccaatttgagaatttagtacaaagaca 70908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 33321293 - 33321377
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaa 255  Q
    |||||| ||| ||| ||||||||||||||||||  ||||||| ||||||||||||| ||| |||||||| |||||||||||||||    
T  33321293 accaatttgaaaaaagtttgacaaagacgtggactattttgagttattaatagagtcagaaaccaatttaaaaatttggtacaaa 33321377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 257
Target Start/End: Original strand, 4067137 - 4067222
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaaga 257  Q
    |||||||||| |||  ||||||||||||||| | |||||||| ||||||||||||| |  ||||||||| |||||||||||||||||    
T  4067137 accaatctgagaaacatttgacaaagacgtg-accattttgagttattaatagagtcaatgaccaatttaaaaatttggtacaaaga 4067222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 27134110 - 27134190
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggta 251  Q
    |||||||||| |||  |||||||||||| || | |||||||| ||||||||||||| | |||||||||| |||||||||||    
T  27134110 accaatctgagaaacatttgacaaagacatgaaccattttgagttattaatagagtcaaagaccaatttaaaaatttggta 27134190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 259
Target Start/End: Complemental strand, 27133915 - 27133842
Alignment:
Q  186 gtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagaca 259  Q
    ||||||||||||| | || |||||||| ||||||||| ||| || || |||||| | |||||||||||||||||    
T  27133915 gtttgacaaagacatagaccattttgagttattaataaagtcagggatcaatttaagaatttggtacaaagaca 27133842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 4066993 - 4066925
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattt 239  Q
    |||||||||| |||  ||||||||||||   || |||||||||||||||||||||| || |||||||||    
T  4066993 accaatctgagaaacttttgacaaagacagtgaccattttgaattattaatagagtcagggaccaattt 4066925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 38208367 - 38208279
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagaca 259  Q
    |||||||||| |||| |||||||||||  |  | |||||||| |||| |||||||| ||||||||| || ||||||| ||| |||||||    
T  38208367 accaatctgagaaatatttgacaaagatataaaccattttgagttatcaatagagtcagagaccaaattaaaaatttagtataaagaca 38208279  T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 45708551 - 45708469
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacatttt-gaattattaatagagttagagaccaattttaaaatttggtac 252  Q
    |||||||||| ||| ||||||||||||| || | |||||| || |||||||||||||||||||||||||| ||||||||||||    
T  45708551 accaatctgagaaacgtttgacaaagacatgaatcatttttgagttattaatagagttagagaccaatttaaaaatttggtac 45708469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 264
Target Start/End: Complemental strand, 55214076 - 55213983
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagacatagac 264  Q
    |||||| ||| ||| ||||||||||||| | || |||||||| ||||||||||| | ||| |||||||| ||||||||||||||||||| ||||    
T  55214076 accaatttgagaaacgtttgacaaagaccttgaccattttgagttattaatagattcagataccaatttgaaaatttggtacaaagacagagac 55213983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 26244969 - 26244881
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagaca 259  Q
    ||||||||||||||| ||||||||||||   || |||||||  ||||||||||||| |  ||||||||| |||||||||||||||||||    
T  26244969 accaatctgataaatatttgacaaagacagagaccattttgttttattaatagagtcatggaccaatttaaaaatttggtacaaagaca 26244881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 33140534 - 33140622
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagaca 259  Q
    |||||||||| |||||||||||||||||   || |||||||| ||||||||||||| ||||| |||||| |  ||||||||||||||||    
T  33140534 accaatctgagaaatgtttgacaaagacagtgaccattttgagttattaatagagtcagagatcaatttgagcatttggtacaaagaca 33140622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 264
Target Start/End: Original strand, 36012669 - 36012764
Alignment:
Q  169 gaaccaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagacatagac 264  Q
    |||||||| ||| ||| |||||| ||||||  ||| |||||||| ||||||||||||| ||||| |||||| | ||||||||||||||||| ||||    
T  36012669 gaaccaatttgagaaacgtttgaaaaagacagggaccattttgagttattaatagagtcagagatcaatttgataatttggtacaaagacagagac 36012764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 171 - 264
Target Start/End: Original strand, 43804145 - 43804238
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagacatagac 264  Q
    |||||||||| |||  ||||||||||||   || |||||||||||||||||| |||||  ||||||||| |||||||||| |||||||| ||||    
T  43804145 accaatctgagaaacatttgacaaagacaatgaccattttgaattattaataaagttaaggaccaatttaaaaatttggtgcaaagacaaagac 43804238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 264
Target Start/End: Complemental strand, 12089066 - 12089007
Alignment:
Q  205 cattttgaattattaatagagttagagaccaattttaaaatttggtacaaagacatagac 264  Q
    |||||||||||||||||| ||| || ||||||||| ||||||||||||||| ||||||||    
T  12089066 cattttgaattattaataaagtcagggaccaatttaaaaatttggtacaaaaacatagac 12089007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 260
Target Start/End: Complemental strand, 33140387 - 33140298
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagacat 260  Q
    |||||| ||| |||||||||||||||||    | |||||||| ||||||||||||| ||| || ||||| | |||||| |||||||||||    
T  33140387 accaatttgaaaaatgtttgacaaagacaaaaatcattttgagttattaatagagtcagaaactaatttaagaatttgatacaaagacat 33140298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 46164076 - 46164164
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagaca 259  Q
    |||||| ||| ||| |||||||||||||   || |||||||| ||||||||||||| || ||| ||||| | |||||| ||||||||||    
T  46164076 accaatatgagaaacgtttgacaaagacagagaccattttgagttattaatagagtcagggactaatttgagaatttgatacaaagaca 46164164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 46163928 - 46163842
Alignment:
Q  173 caatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagaca 259  Q
    |||||||| |||  ||||||||||||  ||| |||||||| |||||||||||||    |||||| || | |||||||||||||||||    
T  46163928 caatctgagaaacatttgacaaagacagggaccattttgagttattaatagagtcgcggaccaaattgagaatttggtacaaagaca 46163842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 32808243 - 32808182
Alignment:
Q  187 tttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttg 248  Q
    ||||||||||||   || |||||||| ||||||||||||| || ||||||||| ||||||||    
T  32808243 tttgacaaagacagagatcattttgagttattaatagagtcagggaccaatttgaaaatttg 32808182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 2051578 - 2051510
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattt 239  Q
    |||||| ||| ||| ||||||||||||   ||| |||||||| ||||||| ||||| ||||||||||||    
T  2051578 accaatatgagaaacgtttgacaaagataaggaccattttgagttattaacagagtcagagaccaattt 2051510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 265
Target Start/End: Original strand, 12089251 - 12089342
Alignment:
Q  173 caatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagacatagaca 265  Q
    |||||||| |||||||||||||||| | || || ||| || ||||||||||||| |   |||||||| | ||||||||||||| |||| ||||    
T  12089251 caatctgaaaaatgtttgacaaaga-gagggacctttagagttattaatagagtcaagaaccaatttaagaatttggtacaaaaacatggaca 12089342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 260
Target Start/End: Complemental strand, 26073254 - 26073165
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagacat 260  Q
    |||||||||| ||| ||||||||||||    || |||||||| ||||||||||||||||||  |||||| ||||||||||||||||||||    
T  26073254 accaatctgagaaacgtttgacaaagaaagtgaccattttgagttattaatagagttagaggtcaatttgaaaatttggtacaaagacat 26073165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 264
Target Start/End: Original strand, 35316100 - 35316193
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagacatagac 264  Q
    |||||||||| ||| |||||| ||||||  ||| |||||||| ||||||||||||| || ||||||||| | ||||||||||||||||| ||||    
T  35316100 accaatctgagaaacgtttgagaaagacagggaccattttgagttattaatagagtcagggaccaatttaagaatttggtacaaagacagagac 35316193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 171 - 260
Target Start/End: Complemental strand, 26097041 - 26096952
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagacat 260  Q
    |||||| ||| ||| ||||||||||||    || |||||||| ||||||||||||||||||  |||||| ||||||||||||||||||||    
T  26097041 accaatttgagaaacgtttgacaaagaaagtgaccattttgagttattaatagagttagaggtcaatttgaaaatttggtacaaagacat 26096952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 26073417 - 26073489
Alignment:
Q  187 tttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagaca 259  Q
    ||||||||||||   || |||||||||||||||||||||| || |||||| || |||||||||||||||||||    
T  26073417 tttgacaaagacagagaccattttgaattattaatagagtcagggaccaaattgaaaatttggtacaaagaca 26073489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 26097204 - 26097276
Alignment:
Q  187 tttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagaca 259  Q
    ||||||||||||   || |||||||||||||||||||||| || |||||| || |||||||||||||||||||    
T  26097204 tttgacaaagacagagaccattttgaattattaatagagtcagggaccaaattgaaaatttggtacaaagaca 26097276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 257
Target Start/End: Complemental strand, 32047329 - 32047258
Alignment:
Q  186 gtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaaga 257  Q
    |||||||||||||   || |||||||| ||||||||||||| |||||||||||| | |||||||||||||||    
T  32047329 gtttgacaaagacagagaccattttgagttattaatagagtcagagaccaatttgagaatttggtacaaaga 32047258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 257
Target Start/End: Original strand, 47315 - 47401
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaaga 257  Q
    |||||||||| ||||||| |||||||||   || |||||||| ||||||||||||  | |||||||||| | |||||||||||||||    
T  47315 accaatctgaaaaatgttcgacaaagacagagatcattttgagttattaatagagacaaagaccaatttaataatttggtacaaaga 47401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 257
Target Start/End: Complemental strand, 25658496 - 25658412
Alignment:
Q  173 caatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaaga 257  Q
    |||||||||||| |||||||||| ||   || |||||||| ||||||| ||||| || ||||||||| | |||||||||||||||    
T  25658496 caatctgataaacgtttgacaaaaacaatgaccattttgagttattaacagagtcagggaccaatttgagaatttggtacaaaga 25658412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 32056730 - 32056648
Alignment:
Q  177 ctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagacat 260  Q
    |||| |||||||||||||||||   || |||||| | ||||||||||||| || |||||| || ||||||||||||||||||||    
T  32056730 ctgagaaatgtttgacaaagacaaagaccattttaagttattaatagagt-agggaccaaattgaaaatttggtacaaagacat 32056648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 36642680 - 36642632
Alignment:
Q  209 ttgaattattaatagagttagagaccaattttaaaatttggtacaaaga 257  Q
    |||| ||||||||||||| || ||||||||| |||||||||||||||||    
T  36642680 ttgagttattaatagagtcagggaccaatttgaaaatttggtacaaaga 36642632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 264
Target Start/End: Complemental strand, 33189959 - 33189900
Alignment:
Q  205 cattttgaattattaatagagttagagaccaattttaaaatttggtacaaagacatagac 264  Q
    |||||||| ||||||||||||| | |||||||||| | || |||||||||||||| ||||    
T  33189959 cattttgagttattaatagagtcaaagaccaatttgagaagttggtacaaagacagagac 33189900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 261
Target Start/End: Original strand, 33190139 - 33190229
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagacata 261  Q
    |||||||||| |||  ||| ||||||||   || |||||||||||||||||||||| || || ||| || |||||||| || |||||||||    
T  33190139 accaatctgagaaacatttaacaaagacagagaccattttgaattattaatagagtcagggatcaaattgaaaatttgatataaagacata 33190229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 21297789 - 21297736
Alignment:
Q  206 attttgaattattaatagagttagagaccaattttaaaatttggtacaaagaca 259  Q
    ||||||| ||||||||||||| |||||| || || | |||||||||||||||||    
T  21297789 attttgagttattaatagagtcagagactaaattaagaatttggtacaaagaca 21297736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 42950601 - 42950692
Alignment:
Q  173 caatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagacatagac 264  Q
    |||| ||| |||||||||||||||||   || |||||||| ||||||||||||| ||||||| |||| |||||||  |||||||||||||||    
T  42950601 caatatgagaaatgtttgacaaagacaatgaccattttgagttattaatagagtcagagacctatttaaaaatttaatacaaagacatagac 42950692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 5074507 - 5074595
Alignment:
Q  169 gaaccaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaaga 257  Q
    |||||||||||| |||  ||||||||||||  ||| |||||||| ||||||||||||  || ||||||||| | |||||||||||||||    
T  5074507 gaaccaatctgaaaaacatttgacaaagacagggaccattttgagttattaatagagacagggaccaatttgagaatttggtacaaaga 5074595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 7905744 - 7905656
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagaca 259  Q
    |||||||||| ||| |||||| ||||||   || |||||||| ||||||||||||| || ||| ||||| |||||||||||||||||||    
T  7905744 accaatctgaaaaacgtttgataaagacagagatcattttgagttattaatagagtcagggactaatttgaaaatttggtacaaagaca 7905656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 11732670 - 11732615
Alignment:
Q  205 cattttgaattattaatagagttagagaccaattttaaaatttggtacaaagacat 260  Q
    |||||||||||||||||||||| || |||||| || ||||||||||||||||||||    
T  11732670 cattttgaattattaatagagtcagtgaccaaattgaaaatttggtacaaagacat 11732615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 38225702 - 38225777
Alignment:
Q  183 aatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagac 258  Q
    |||||||||||||||| || | |||||| ||||||||||||||| || ||||||||| | ||||||||| ||||||    
T  38225702 aatgtttgacaaagacatgaaccattttaaattattaatagagtcagggaccaatttgataatttggtataaagac 38225777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 23488843 - 23488927
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaa 255  Q
    |||||||||| |||| ||||||||||||   || |||||||||||||| ||||||| || ||||||||| | |||||||| ||||    
T  23488843 accaatctgagaaatatttgacaaagacagagaccattttgaattattcatagagtcagggaccaatttgagaatttggttcaaa 23488927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 38225543 - 38225455
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagaca 259  Q
    |||||||||| |||| ||||||||| ||   || |||||||| ||||||||||||| || |||||| || | |||||||||||||||||    
T  38225543 accaatctgaaaaatatttgacaaataccaagaccattttgagttattaatagagtaagggaccaaattgagaatttggtacaaagaca 38225455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 255
Target Start/End: Original strand, 34153466 - 34153551
Alignment:
Q  169 gaaccaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaa 255  Q
    |||||||| ||| ||| ||||||||||||| |  | |||||||| ||||||||||||| | |||||||||| | |||||||||||||    
T  34153466 gaaccaatttgagaaacgtttgacaaagacata-atcattttgagttattaatagagtcatagaccaatttgataatttggtacaaa 34153551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 42027052 - 42026966
Alignment:
Q  173 caatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagaca 259  Q
    |||| ||| ||| ||||||||||||||   |||||||||| ||||||||| |||  | ||||||||| ||||||||||| |||||||    
T  42027052 caatttgagaaaggtttgacaaagacgaaaaacattttgagttattaataaagtcggggaccaatttaaaaatttggtaaaaagaca 42026966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 257
Target Start/End: Complemental strand, 16997188 - 16997118
Alignment:
Q  187 tttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaaga 257  Q
    ||||||||||||   || |||||||| ||||||||||||||||  ||||| || | |||||||||||||||    
T  16997188 tttgacaaagacaaagaccattttgagttattaatagagttaggaaccaaattgataatttggtacaaaga 16997118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 23488969 - 23489041
Alignment:
Q  187 tttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagaca 259  Q
    ||||||||||||   || |||||||| ||||| ||||||| |  ||||||||| | |||||||||||||||||    
T  23488969 tttgacaaagacaatgaccattttgagttattcatagagtcatggaccaatttgagaatttggtacaaagaca 23489041  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 42027217 - 42027289
Alignment:
Q  187 tttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagaca 259  Q
    ||||||||||||  | | |||||| | ||||||||||||| |||||||||||| | ||||| ||| |||||||    
T  42027217 tttgacaaagacaagaaccattttaagttattaatagagtcagagaccaatttaagaattttgtataaagaca 42027289  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 10388496 - 10388565
Alignment:
Q  189 tgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagac 258  Q
    |||||||||| |||| |||||||| ||||||||||||||||| |||||||| | ||| ||||||||||||    
T  10388496 tgacaaagacatggatcattttgatttattaatagagttagaaaccaatttgagaatatggtacaaagac 10388565  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 258
Target Start/End: Original strand, 67597 - 67684
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagac 258  Q
    |||||||||| ||| || |||||||||||  ||  ||||||| ||||||||| | | |||||||||||| ||||||||||||||||||    
T  67597 accaatctgaaaaacgtatgacaaagacggagactattttgagttattaataaaatcagagaccaatttgaaaatttggtacaaagac 67684  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 6714532 - 6714603
Alignment:
Q  188 ttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagaca 259  Q
    |||||||||||   || |||||||||||||||||| ||| |||||||||||| | |||||||||||||||||    
T  6714532 ttgacaaagacaaagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaagaca 6714603  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 260
Target Start/End: Complemental strand, 67450 - 67361
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagacat 260  Q
    |||||||||| |||||||||| ||| ||  ||| |||||| | ||||||||| ||| || ||||||||| | ||||||||||||||||||    
T  67450 accaatctgagaaatgtttgataaaaacagggaccattttaagttattaatatagtcagggaccaatttgagaatttggtacaaagacat 67361  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 264
Target Start/End: Complemental strand, 30847735 - 30847642
Alignment:
Q  171 accaatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagacatagac 264  Q
    |||||||||| ||| ||||||||||||   ||| |||||| ||||||||||||| | | |||||||||  | ||||||||| ||||||||||||    
T  30847735 accaatctgagaaacgtttgacaaagatagggaccattttaaattattaatagaatcatagaccaattcaagaatttggtataaagacatagac 30847642  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 259
Target Start/End: Complemental strand, 10388295 - 10388241
Alignment:
Q  205 cattttgaattattaatagagttagagaccaattttaaaatttggtacaaagaca 259  Q
    |||||||| ||||||||||||| |||||||| ||| ||||||||||| |||||||    
T  10388295 cattttgagttattaatagagtcagagaccagtttaaaaatttggtataaagaca 10388241  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 30122817 - 30122889
Alignment:
Q  187 tttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaagaca 259  Q
    ||||||||||||   || |||||||| ||||||||| |||||| ||||||||| | |||||| ||||||||||    
T  30122817 tttgacaaagacagagaccattttgagttattaataaagttagggaccaatttgagaatttgatacaaagaca 30122889  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 35072250 - 35072198
Alignment:
Q  207 ttttgaattattaatagagttagagaccaattttaaaatttggtacaaagaca 259  Q
    |||||| ||||||||||||| || || ||| || |||||||||||||||||||    
T  35072250 ttttgatttattaatagagtcagtgatcaaattgaaaatttggtacaaagaca 35072198  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 22843842 - 22843767
Alignment:
Q  182 aaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaaga 257  Q
    |||| ||||||||||||   || |||||||||||||||||||| | || |||||| || |||||||||||||||||    
T  22843842 aaatatttgacaaagacagagaccattttgaattattaatagaatgagggaccaaattgaaaatttggtacaaaga 22843767  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 36150991 - 36151073
Alignment:
Q  173 caatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagttagagaccaattttaaaatttggtacaaa 255  Q
    |||| ||| ||| |||||||||||||   || |||||||| ||||| ||||||||||  |||||||| | |||||||||||||    
T  36150991 caatttgagaaacgtttgacaaagacagagaccattttgagttattcatagagttaggaaccaatttgagaatttggtacaaa 36151073  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 13932819 - 13932872
Alignment:
Q  173 caatctgataaatgtttgacaaagacgtggaacattttgaattattaatagagt 226  Q
    |||||||| ||| ||||||||||||| | || |||||||| |||||||||||||    
T  13932819 caatctgagaaacgtttgacaaagacattgaccattttgagttattaatagagt 13932872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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