View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13062_low_16 (Length: 227)
Name: NF13062_low_16
Description: NF13062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13062_low_16 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 13317013 - 13317239
Alignment:
| Q |
1 |
ttggaaatgcaagtagaaatcaagccatttataagcaacttccaatttgaaagaaaagtcgtctccttcaacaatgttttcatcaaatatacgatgataa |
100 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
13317013 |
ttggaaatgcaagttgaaatcaagccatttataagaaacttccaaattgaaagaaaagtcgcctccttcaacaatgttttcatcaaatatacgatgataa |
13317112 |
T |
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| Q |
101 |
aaatcaacatccactaaaatacgagcaggatgtctgaagaatctatttttagtagcagtatcaataattattggagtacctattgccctagcaattttga |
200 |
Q |
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| T |
13317113 |
aaatcaacatccactaaaatacgagcaagatgtctgaagaatctatttttagtagcagtatcaataattagaagagtacttattgccctagcaattttga |
13317212 |
T |
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| Q |
201 |
caagagtttgattacgctaatattcct |
227 |
Q |
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| T |
13317213 |
gaagagtttgattacgctaatattcct |
13317239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 13308254 - 13308033
Alignment:
| Q |
1 |
ttggaaatgcaagtagaaatcaagccatttataagcaacttccaatttgaaagaaaagtcgtctccttcaacaatgttttcatcaaatatacgatgataa |
100 |
Q |
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|||| ||||||||||||||||||| ||||| |||||||||| ||| ||||||| |||| |||||||||||| | ||||||||||||||||||| || || |
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| T |
13308254 |
ttggcaatgcaagtagaaatcaagtcatttttaagcaactttcaaattgaaagcaaag--gtctccttcaaccaagttttcatcaaatatacgacgagaa |
13308157 |
T |
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| Q |
101 |
aaatcaacatccactaaaatacgagcaggatgtctgaagaatctatttttagtagcagtatcaataattattggagtacctattgccctagcaattttga |
200 |
Q |
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| T |
13308156 |
aaattaacatccactaaaatacgagcatgatgtctgaagaatctacatttagtagcagtatcaataactagagaagtacttattgccctagcaattttga |
13308057 |
T |
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| Q |
201 |
caagagtttgattacgctaatatt |
224 |
Q |
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| T |
13308056 |
gaagagtttgattacgctaatatt |
13308033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 13303667 - 13303554
Alignment:
| Q |
1 |
ttggaaatgcaagtagaaatcaagccatttataagcaacttccaatttgaaagaaaagtcgtctccttcaacaatgttttcatcaaatatacgatgataa |
100 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||| ||||||| ||||| || |||||||| | ||||| |||||||||| || | || |
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| T |
13303667 |
ttggcaatgcaagtagaaatcaagccatttatcagcaacttccaaattgaaagcaaagttgttaccttcaaccaagtttttatcaaatatatgacaagaa |
13303568 |
T |
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| Q |
101 |
aaatcaacatccac |
114 |
Q |
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|||||||||||||| |
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| T |
13303567 |
aaatcaacatccac |
13303554 |
T |
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