View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13062_low_2 (Length: 540)

Name: NF13062_low_2
Description: NF13062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13062_low_2
NF13062_low_2
[»] chr7 (6 HSPs)
chr7 (6-522)||(45365613-45366132)
chr7 (32-104)||(29974276-29974348)
chr7 (70-123)||(5934582-5934635)
chr7 (34-121)||(1786663-1786749)
chr7 (57-122)||(4888730-4888795)
chr7 (148-185)||(31307209-31307246)
[»] chr2 (5 HSPs)
chr2 (33-123)||(33051596-33051685)
chr2 (57-98)||(27956199-27956240)
chr2 (57-101)||(31634104-31634148)
chr2 (57-101)||(2155967-2156011)
chr2 (67-123)||(5171640-5171696)
[»] chr1 (2 HSPs)
chr1 (44-121)||(8967836-8967913)
chr1 (57-101)||(13444033-13444077)
[»] chr5 (2 HSPs)
chr5 (33-120)||(22440839-22440924)
chr5 (62-123)||(18252394-18252455)
[»] chr8 (2 HSPs)
chr8 (57-98)||(22921895-22921936)
chr8 (57-98)||(37189869-37189910)
[»] chr4 (3 HSPs)
chr4 (70-123)||(38888048-38888101)
chr4 (67-123)||(9260551-9260607)
chr4 (67-123)||(18657097-18657153)
[»] scaffold0110 (1 HSPs)
scaffold0110 (64-123)||(45343-45403)
[»] scaffold0054 (1 HSPs)
scaffold0054 (58-98)||(37714-37754)


Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 6 - 522
Target Start/End: Complemental strand, 45366132 - 45365613
Alignment:
Q  6 gaagaatatgacacgtgggagcaaaaactagcaagtgctaaatctaaatagagaaaagaataagtttgctagcgacaaacctatgaaaataggatttcag 105  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45366132 gaagaatatgacacgtgggagcgaaaactagcaagtgctaaatctaaatagagaaaagaataagtttgctagcgacaaacctatgaaaataggatttcag 45366033  T
Q  106 aatccactagaaattgagtactaagtaaatgctaatgggctgaaaatccaaaacataaattattaaaattggaatgaaatgataaaatctaatttgtggc 205  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45366032 aatccattagaaattgagtactaagtaaatgctaatgggctgaaaatccaaaacataaattattaaaattggaatgaaatgataaaatctaatttgtggc 45365933  T
Q  206 cttcaaatgaactcgtgagtcaattccctttctaaaaaggtattttattagtcattcggacatcagataccaaatatgctctatttcgggcgaacttttc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||    
T  45365932 cttcaaatgaactcgtgagtcaattccctttctaaaaaggtattttattagtcattctgacatcaaataccaaatatgctctattccgggcgaacttttc 45365833  T
Q  306 tcacgcgcaacttcatcttcaatgtgtgcggtcagccctcctacatcagaatattgtaaaatagtgattagttaaatttttaataaatttaagttatcaa 405  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45365832 tcacgctcaacttcatcttcaatgtgtgcggtcagccctcctacatcagaatattgtacaatagtgattagttaaatttttaataaatttaagttatcaa 45365733  T
Q  406 caatttgcaatactccttccggtcacatttataa---gaagnnnnnnnnntagattcatttaatacgcttggtctatgttaagatcatgtatatatacat 502  Q
    ||||||| |||||||||||| |||||||||||||   ||||         |||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  45365732 caatttgtaatactccttccagtcacatttataagaagaagaaaaaaaattagattcatttaatacccttggtctatgtaaagatcatgtatatatacat 45365633  T
Q  503 tatgtattcgataaacctaa 522  Q
    ||||||||||||||||||||    
T  45365632 tatgtattcgataaacctaa 45365613  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 29974276 - 29974348
Alignment:
Q  32 actagcaagtgctaaatctaaatagagaaaagaataagtttgctagcgacaaacctatgaaaataggatttca 104  Q
    ||||||||| | ||||| || ||||||||||||| || ||||| ||| |||||||||||||||||||||||||    
T  29974276 actagcaagcgttaaatttagatagagaaaagaacaaatttgcaagctacaaacctatgaaaataggatttca 29974348  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 5934635 - 5934582
Alignment:
Q  70 tttgctagcgacaaacctatgaaaataggatttcagaatccactagaaattgag 123  Q
    ||||| |||||||||| | ||||||||||||||||||||||| |||||||||||    
T  5934635 tttgcaagcgacaaacttgtgaaaataggatttcagaatccattagaaattgag 5934582  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 121
Target Start/End: Complemental strand, 1786749 - 1786663
Alignment:
Q  34 tagcaagtgctaaatctaaatagagaaaagaataagtttgctagcgacaaacctatgaaaataggatttcagaatccactagaaattg 121  Q
    |||||||||||||| ||| ||||| |||| || |||||||| |||||||||| |  ||||||||| || |||||||||  ||||||||    
T  1786749 tagcaagtgctaaacctagataga-aaaataacaagtttgcaagcgacaaacatgcgaaaatagggttccagaatccatcagaaattg 1786663  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 4888730 - 4888795
Alignment:
Q  57 agaaaagaataagtttgctagcgacaaacctatgaaaataggatttcagaatccactagaaattga 122  Q
    ||||||||| |||||||| |||||||||||| |||||||||  || | |||| ||| |||||||||    
T  4888730 agaaaagaacaagtttgcaagcgacaaacctgtgaaaatagagttccggaattcaccagaaattga 4888795  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 31307246 - 31307209
Alignment:
Q  148 aaaatccaaaacataaattattaaaattggaatgaaat 185  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  31307246 aaaatccaaaacaaaaattattaaaattggactgaaat 31307209  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 33 - 123
Target Start/End: Complemental strand, 33051685 - 33051596
Alignment:
Q  33 ctagcaagtgctaaatctaaatagagaaaagaataagtttgctagcgacaaacctatgaaaataggatttcagaatccactagaaattgag 123  Q
    |||||||| |||||| |||||| || ||||||| |||||||| |||||||||| | |||||||||| ||   |||||||||||||||||||    
T  33051685 ctagcaagcgctaaacctaaattga-aaaagaacaagtttgcaagcgacaaacttttgaaaatagggttctggaatccactagaaattgag 33051596  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 27956199 - 27956240
Alignment:
Q  57 agaaaagaataagtttgctagcgacaaacctatgaaaatagg 98  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  27956199 agaaaagaacaagtttgcaagcgacaaacctatgaaaatagg 27956240  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 31634148 - 31634104
Alignment:
Q  57 agaaaagaataagtttgctagcgacaaacctatgaaaataggatt 101  Q
    ||||||||| ||||||||||||||||||| | |||||||||||||    
T  31634148 agaaaagaacaagtttgctagcgacaaacttgtgaaaataggatt 31634104  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 2156011 - 2155967
Alignment:
Q  57 agaaaagaataagtttgctagcgacaaacctatgaaaataggatt 101  Q
    ||||||||| |||||||| |||||||||| | |||||||||||||    
T  2156011 agaaaagaacaagtttgcgagcgacaaacttgtgaaaataggatt 2155967  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 5171640 - 5171696
Alignment:
Q  67 aagtttgctagcgacaaacctatgaaaataggatttcagaatccactagaaattgag 123  Q
    |||||||| |||||||||| | | |||||||| ||  ||||||||||||||||||||    
T  5171640 aagtttgcaagcgacaaacttgtaaaaatagggttcaagaatccactagaaattgag 5171696  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 121
Target Start/End: Original strand, 8967836 - 8967913
Alignment:
Q  44 taaatctaaatagagaaaagaataagtttgctagcgacaaacctatgaaaataggatttcagaatccactagaaattg 121  Q
    |||| ||| ||||||||||||| |||||||| |  |||||||||||||||||||| || |||||||||| | ||||||    
T  8967836 taaacctagatagagaaaagaacaagtttgcaaatgacaaacctatgaaaatagggttccagaatccaccaaaaattg 8967913  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 13444033 - 13444077
Alignment:
Q  57 agaaaagaataagtttgctagcgacaaacctatgaaaataggatt 101  Q
    ||||||||| |||||||| |||||||||| | |||||||||||||    
T  13444033 agaaaagaacaagtttgcaagcgacaaacttgtgaaaataggatt 13444077  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 22440924 - 22440839
Alignment:
Q  33 ctagcaagtgctaaatctaaatagagaaaagaataagtttgctagcgacaaacctatgaaaataggatttcagaatccactagaaatt 120  Q
    ||||||||||||||| ||| |||||  |||||| | ||| || |||||||||| ||||| |||||| || ||||||||||||||||||    
T  22440924 ctagcaagtgctaaacctagataga--aaagaacatgttcgcaagcgacaaacttatgataatagggttccagaatccactagaaatt 22440839  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 18252455 - 18252394
Alignment:
Q  62 agaataagtttgctagcgacaaacctatgaaaataggatttcagaatccactagaaattgag 123  Q
    |||| |||||||| |||||||||||| |||||||||| ||  | ||||||||||||||||||    
T  18252455 agaacaagtttgcaagcgacaaacctgtgaaaatagggttctataatccactagaaattgag 18252394  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 22921895 - 22921936
Alignment:
Q  57 agaaaagaataagtttgctagcgacaaacctatgaaaatagg 98  Q
    |||||||||||||||||| |||||||||| | ||||||||||    
T  22921895 agaaaagaataagtttgcaagcgacaaacttgtgaaaatagg 22921936  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 37189910 - 37189869
Alignment:
Q  57 agaaaagaataagtttgctagcgacaaacctatgaaaatagg 98  Q
    |||||||||||||||||| |||||||||| | ||||||||||    
T  37189910 agaaaagaataagtttgcaagcgacaaacttgtgaaaatagg 37189869  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 38888048 - 38888101
Alignment:
Q  70 tttgctagcgacaaacctatgaaaataggatttcagaatccactagaaattgag 123  Q
    ||||| |||||||||| | |||||||||| |||| ||||||| |||||||||||    
T  38888048 tttgcaagcgacaaacttgtgaaaatagggtttcggaatccattagaaattgag 38888101  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 9260607 - 9260551
Alignment:
Q  67 aagtttgctagcgacaaacctatgaaaataggatttcagaatccactagaaattgag 123  Q
    |||||||| | |||||||| |  ||||||||| ||||||||||||| ||||||||||    
T  9260607 aagtttgcaaacgacaaacttgcgaaaatagggtttcagaatccaccagaaattgag 9260551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 18657097 - 18657153
Alignment:
Q  67 aagtttgctagcgacaaacctatgaaaataggatttcagaatccactagaaattgag 123  Q
    ||||||||  ||||||||| | | ||||||||||||||||||||||  |||||||||    
T  18657097 aagtttgcatgcgacaaacttgtaaaaataggatttcagaatccaccggaaattgag 18657153  T

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Target: scaffold0110 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 45343 - 45403
Alignment:
Q  64 aataagtttgctagcgacaaacctatgaaaat-aggatttcagaatccactagaaattgag 123  Q
    |||||| |||| |||||||||||||| ||||| ||| || |||||||||| ||||||||||    
T  45343 aataaggttgcaagcgacaaacctatcaaaataagggttccagaatccaccagaaattgag 45403  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 37754 - 37714
Alignment:
Q  58 gaaaagaataagtttgctagcgacaaacctatgaaaatagg 98  Q
    |||||||| |||||||| |||||||||| ||||||||||||    
T  37754 gaaaagaacaagtttgcaagcgacaaacttatgaaaatagg 37714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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