View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13062_low_3 (Length: 448)
Name: NF13062_low_3
Description: NF13062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13062_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 63 - 189
Target Start/End: Complemental strand, 44718522 - 44718396
Alignment:
| Q |
63 |
gcctctgcatgtgcagactgcagaccgttggcccaacatgggtccacagtccgtacaaacatagtgtgccctagttaacatgaatagttataatcaataa |
162 |
Q |
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| T |
44718522 |
gcctctgcatgtgcagactgcagaccgttggcccaacatgggtccacagtccgtacaaacatagtgtgccctagttaacatgaatagttataatcaataa |
44718423 |
T |
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| Q |
163 |
aataattatcatggtaaattctttttt |
189 |
Q |
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| T |
44718422 |
aataattatcatggtaaattctttttt |
44718396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 170 - 367
Target Start/End: Complemental strand, 44718382 - 44718179
Alignment:
| Q |
170 |
atcatggtaaattcttttttagcctctc--------aataaaataaatcatatttggcctcaagattccttgcttggatattaggacatcaaccatagat |
261 |
Q |
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| T |
44718382 |
atcatggtaaattcttttttagcctctcgataaaaaaataaaaaaaatcatatttggcctcaagattccttgcttggatattaggacatcaaccatagat |
44718283 |
T |
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| Q |
262 |
tgtattttttcttctaaatatcattttattatcatttagccnnnnnnnccagattaaattatatacatacttttttgcttgtgttatggattgtggcccc |
361 |
Q |
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| T |
44718282 |
tttattttttcttctaaatatcattttattatcatttagccaaaaaaacaagatgaaat--tatacaaacttttttgcttgtgttatggattttggcccc |
44718185 |
T |
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| Q |
362 |
ttaaca |
367 |
Q |
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|||||| |
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| T |
44718184 |
ttaaca |
44718179 |
T |
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