View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13062_low_8 (Length: 310)
Name: NF13062_low_8
Description: NF13062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13062_low_8 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 21 - 310
Target Start/End: Complemental strand, 13317789 - 13317495
Alignment:
| Q |
21 |
ggcctaaccatttatatgagtgaattggttgttgaccaccgatctttccaagaattgcttgtgcaaatgcctgttctgggcgctagcttttccgtcatgg |
120 |
Q |
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| T |
13317789 |
ggcctaaccatttatatgagtgaattggttgttgaccaccgatctttccaagaatcgcttgtgcaaatgcctgttctgggcgctagcttttccgtcatgg |
13317690 |
T |
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| Q |
121 |
tagatagatgcccaaggcctcacatggt----ctcgtttactgataaacctcttcccaccacact-ggattaacaagtcttttgtacaactgatgttgaa |
215 |
Q |
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| T |
13317689 |
tagatagatgcccaaggcctcacatggtcaagctcgttaactaataaacgtcttcccaccacactaggattaacaagtcttttgtacaactgatgttgaa |
13317590 |
T |
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| Q |
216 |
tatagtgattatatggagtgataccttacttgttccatcaattaagggtgattcactttgtattgagattacatggccgacttgtacatgataag |
310 |
Q |
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| T |
13317589 |
tatagtgattatatggagtgataccttacttgttcaatcaattaagggtgattcactttgtattaagattacatggtcgacttgtacatggtaag |
13317495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 35 - 310
Target Start/End: Original strand, 13307496 - 13307772
Alignment:
| Q |
35 |
tatgagtgaattggttgttgaccaccgatctttccaagaattgcttgtgcaaatgcctgttctgggcgctagcttttccgtcatggtagatagatgccca |
134 |
Q |
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| T |
13307496 |
tatgagtgaattggttgttgaccaccgatctttccaagaattgcttgtgcaaatacctgttaggagtattagcttttctgtcatgtcagatagatgccca |
13307595 |
T |
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| Q |
135 |
aggcctcacatggtctcgtttactgataaacctcttcccaccacactgg-attaacaagtcttttgtacaactgatgttgaatatagtgattatatggag |
233 |
Q |
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| T |
13307596 |
aggcctcacatggtctcctgcactgacaaacatcttgcccccacactggcattaacaagtcttttgtacaactggtgttgaatgtagtgactatatggag |
13307695 |
T |
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| Q |
234 |
tgataccttacttgttccatcaattaagggtgattcactttgtattgagattacatggccgacttgtacatgataag |
310 |
Q |
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| T |
13307696 |
tgataccttactcgttgcatcaattaagggtgattcacttcgaatcaagattacatggtcgatttgtacttgataag |
13307772 |
T |
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